Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., type II secretion system secretin GspD from Rhodanobacter sp000427505 FW510-R12

 Score =  110 bits (274), Expect = 3e-28
 Identities = 95/327 (29%), Positives = 150/327 (45%), Gaps = 38/327 (11%)

Query: 301 TSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGIN 360
           +S    V I++   +N L++ A       +   I +LD    QV IE  I+E+       
Sbjct: 458 SSSDGSVRISSVDGSNQLLVRARPSQWEEIKTAISKLDNVPLQVQIETRILEVNLTGEFQ 517

Query: 361 LGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGD 420
            GVQW  LE  +    G+TG++     +  +  +   +   +    N F         G 
Sbjct: 518 FGVQW-YLEGLT----GSTGSTSNGTFVPGQPYRH--RQLGLGQGGNAF---------GG 561

Query: 421 YTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEV 480
                S L+S           D    + A+    ++  LS+PS+ VM+N  AS  VG ++
Sbjct: 562 EPFFYSFLNS-----------DLQVAVRAMETSGNTKTLSAPSMVVMNNQVASIAVGNQI 610

Query: 481 PVI-TGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSN------VLG 533
           P+  T    G      +  V+    G+ L V P+IN G  V +NI QEVS       ++ 
Sbjct: 611 PINQTSVNTGIGTTTSYSQVNYLSTGVILNVQPRINPGGLVYMNISQEVSQADKSVPLVN 670

Query: 534 ANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTS 593
            N A+    ++R+L T V VQ GQ ++LGGLI +    +++ +P L  +P+LG+LF ST+
Sbjct: 671 GNPAI----SQRKLATQVAVQSGQTVLLGGLIQQAEGNTDTGIPGLNRVPVLGRLFGSTN 726

Query: 594 SQVEKKNLMVFIKPTIIRDGVTADGIT 620
               +  L+V I P +IR G  A  IT
Sbjct: 727 RSRNRTELIVLITPRVIRGGADAKQIT 753



 Score = 50.1 bits (118), Expect = 4e-10
 Identities = 64/282 (22%), Positives = 127/282 (45%), Gaps = 17/282 (6%)

Query: 17  LSTPLAMANEFSA---SFKGTDIQEFIN-IVGRNLEKTIIVDPSVRGKVDVRSFDTLNEE 72
           L+TP  +A+   A   +F+   +Q  +  I+G  L++   + P V+G +   + + ++  
Sbjct: 83  LATPRPVASGNGAVTFNFENQPVQAVVKAILGDLLKQNYTIVPGVQGNISFATSEPVDAS 142

Query: 73  QYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKT-SAIPVLSGEERANGDEVITQVVAV 131
           Q      ++L   G A+V  D G + V+  KDA   + +P L     A G  +  ++  +
Sbjct: 143 QALPILETLLSWTGNALVRRDGGYV-VMPQKDAVAGNLVPSLGASAPAGG--LQARLFPL 199

Query: 132 KNVSVRELSPLLRQLIDNAGAGNVVHYDPA-NIILITGRAAVVNRLAEIIRR--VDQAGD 188
             +S  E+  L++     A     +  DPA N+++++G    +     ++R   VD    
Sbjct: 200 HYISATEMQKLIKPF---ARPDATLLVDPARNLLVMSGTPQELANYQSMVRTFDVDWLRG 256

Query: 189 KEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNS-ILISGDPKVRE 247
             + V  L  A+  E++  ++A+    +  NTP     +F+  ERTN+ ++IS      +
Sbjct: 257 MSVGVFNLQYANVGELMPKLDAM--FGEHGNTPLAGMLRFIPIERTNALVVISTQSDYLQ 314

Query: 248 RLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSEN 289
            +   I ++D     +    V  ++  KA DL + L  +  N
Sbjct: 315 EVGDWIARIDRGGGNEPQLFVYDVRNIKASDLAKYLAQIYAN 356