Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 742 a.a., Secretin XpsD from Xanthobacter sp. DMC5

 Score =  142 bits (357), Expect = 7e-38
 Identities = 163/676 (24%), Positives = 287/676 (42%), Gaps = 124/676 (18%)

Query: 27  FSASFKGTDIQEFINIVGRN-LEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVY 85
           +  +F+ T +     +V  + L   +I+DP V+G + + S   +          S L   
Sbjct: 87  YDLNFENTPVTTVAKVVLTDILGANVIIDPRVQGTISLSSARPVARTDLAYVLESALRSN 146

Query: 86  GFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQ 145
           G A+V+  +G   +  ++ A + A  V  G  R      ++ VV ++ VS   L P++  
Sbjct: 147 GIALVKDASGYQLMPLTEAAGSGATDV--GTSRPEPGYGVS-VVPLRYVSAETLMPVIDS 203

Query: 146 LIDNAGAGNVVHYDPA-NIILITG----RAAVVNRLAEIIRRVDQAGDKEIEVVELNNAS 200
               AG   +V  DP  N++LI G    R A +N         D    + + +  L N++
Sbjct: 204 FATRAG---MVRVDPGRNVLLIQGTAQERQAAINTALSF--DADWMRGQSVGIYPLRNSA 258

Query: 201 AAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILI-SGDPKVRERLKRLIKQLDVE 259
              ++  +E L    +   + + +K  F A  R NS+++ +  P +       I++LD  
Sbjct: 259 PEPLIAELETLLDAGEGGLSHKMVK--FQAINRMNSVMVVAKKPDLLRTAATWIERLDRS 316

Query: 260 MAAKGNNRVVYLKYAKAED----LVEVLKGVSEN-------------------------- 289
            ++ G  RV  L+Y +A      L E+  G S                            
Sbjct: 317 DSSVGV-RVYRLRYGEARQTARVLNELFNGTSSQGLDQASNQIAPGSGSSASSNGGGSNG 375

Query: 290 -LQAEKGTGQPTTSKRNE---------------------------------VMIAAHADT 315
            +  ++  GQ  T  + +                                 + I A    
Sbjct: 376 PMSVQQRLGQTPTQNQGQGGQNAQPVNRGETDNELQGGSGPSGGGGAILSGIRITADQVN 435

Query: 316 NSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQ 375
           NSL++ A Q+    +   + QLD  + QV IEA + E+   D +  GVQ+  L S  +  
Sbjct: 436 NSLLIYASQENYRIIERTLLQLDQPQLQVAIEATVAEVTLNDQLAYGVQF-FLTSKDLGL 494

Query: 376 YGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAA 435
             N G+++                        N L +E T       ++    + + G  
Sbjct: 495 GKNNGSAV------------------------NTLSSEITNQA--INRVLPGFNLLIGRE 528

Query: 436 VSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGS-TAGSNNDN 494
               M     +++A+   +   +LS+PS+ V+DN +A+  VG+EVPV TGS T  ++++ 
Sbjct: 529 NQPKM-----ILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLTSSNT 583

Query: 495 PFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLG---ANGA------VDVRFAKR 545
              T++ K  GI L V P++N    V+L+IEQE+SNV     ANG+      +    ++R
Sbjct: 584 VVNTIEYKNTGIILHVTPRVNVNGQVRLDIEQEISNVTKQPTANGSSSDGSTLTPTVSQR 643

Query: 546 QLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFI 605
           ++ +++ V  GQ ++L GLI ER+      VP+L  IP +G  F    + V++  L++FI
Sbjct: 644 RVKSTIAVTSGQTVLLAGLISERSDGVRQGVPVLDQIPGVGDAFAHKDTTVKRTELIIFI 703

Query: 606 KPTIIRDGVTADGITQ 621
           +P IIRD + A  + +
Sbjct: 704 RPQIIRDNMDAHTVAE 719