Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., secretin from Pseudomonas simiae WCS417

 Score = 95.1 bits (235), Expect = 5e-24
 Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 12/188 (6%)

Query: 430 SIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAG 489
           S  G  V    G   A+INA+     +  L+ PS+  M    ASF+ G EVP+   S AG
Sbjct: 182 STDGFNVGFGGGRVKAMINALERSGFAYTLARPSLVAMSGQSASFLAGGEVPIPVPS-AG 240

Query: 490 SNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVR------FA 543
           S+  +    ++ KE GI+L + P + + + + L +  EVS  L  + AV ++        
Sbjct: 241 SDTIS----IEYKEFGIRLTLTPTVIDRSRISLKVAPEVSE-LDYSNAVQIQGIQVPALT 295

Query: 544 KRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMV 603
            R+ +TSV + DG+  V+ GLI      + +K P LGDIP+LG  FR ++   E+K L++
Sbjct: 296 VRRTDTSVSLADGESFVISGLISSNNRSTINKFPGLGDIPILGAFFRDSNISREEKELLM 355

Query: 604 FIKPTIIR 611
            + P +++
Sbjct: 356 IVTPHLVQ 363