Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 703 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

 Score =  140 bits (354), Expect = 2e-37
 Identities = 151/654 (23%), Positives = 277/654 (42%), Gaps = 88/654 (13%)

Query: 30  SFKGTDIQEFIN-IVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFA 88
           +F    I+  IN ++G  L +   +   V+G V   +   ++++Q  S   ++L     A
Sbjct: 92  NFADQPIEAVINSVMGDLLHENYSIAQGVKGNVSFSTSKPVDKQQALSILETLLSWTDNA 151

Query: 89  VVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLID 148
           +++  +  + +  ++      +P ++  + ++G  +  ++ A++ +S  E+  LL+    
Sbjct: 152 MIKQGDRYVILPANQAVAGKLVPQMNVAQPSSG--LSARLFALRYISATEMQKLLKPF-- 207

Query: 149 NAGAGNVVHYDPA-NIILITGRAAVVNRLAEIIRR--VDQAGDKEIEVVELNNASAAEMV 205
            A     +  DPA N++ + G    +    + I    VD      + V  L  AS AE++
Sbjct: 208 -ARENAFLLVDPARNVLSLAGTPDELANYQDTIDTFDVDWLKGMSVGVFGLQRASVAELM 266

Query: 206 RIVEALNKTTDAQNTPEFLKPKFVADERTNSIL-ISGDPKVRERLKRLIKQLDVEMAAKG 264
             ++++            L+  F+  ERTNS++ IS  P+    +   I+ +D     + 
Sbjct: 267 PQLQSMFGPDSGMPLAGMLR--FLPIERTNSVVAISSQPQYLSEVGDWIRTIDEGGGNEP 324

Query: 265 NNRVVYLKYAKAEDLVEVLKGV-------------------------------------S 287
              V  ++  KA DL + L+ +                                     +
Sbjct: 325 QMYVYDVRNMKAADLAKYLRQIYGTGAIKDDTPAKVAPGLRTTTLSSLNSGGLQNNPPAA 384

Query: 288 ENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIE 347
           E  + ++    PT++      I A   +N L++         +   I +LD    QV IE
Sbjct: 385 EESEPQEKEVAPTSALEAGTRITAQKSSNQLLVRTRPAQWKEIEAAIKRLDNPPLQVQIE 444

Query: 348 ALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNN 407
             I+E+     ++LGVQW              G   GN       +  TT   A      
Sbjct: 445 TRILEVKLTGELDLGVQW------------YLGRLAGN-------SSSTTVANA------ 479

Query: 408 NFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVM 467
                  + ++G      + L +      S    +    ++A+  +  + +LS+PS+ VM
Sbjct: 480 -------SGSQGALGGGGAGLGATDSLFYSFVSSNLQVALHALETNGRTQVLSAPSLVVM 532

Query: 468 DNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQE 527
           +N  A   VG+ +P+   +    + D    +V+  + G+ L VVP+IN G  V ++I+Q+
Sbjct: 533 NNQPAQIQVGDNIPINQTTVNTGDADTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQ 592

Query: 528 VSNV----LGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIP 583
           VS+       ++  V+ R + R ++T V VQ GQ ++LGGLI +   ES S VP LG IP
Sbjct: 593 VSDAENQSTNSDTPVNPRISTRSVSTQVAVQSGQTVLLGGLIKQDNQESVSAVPYLGKIP 652

Query: 584 LLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEK 637
            L  LF STS   ++  L+V I P +I     A  +T    +Y +  QL R +K
Sbjct: 653 GLRWLFGSTSKSKDRTELIVLITPKVITSSGQARQVTD---DYRQQMQLLRLDK 703