Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 764 a.a., general secretion pathway protein GspD from Pseudomonas simiae WCS417

 Score =  291 bits (745), Expect = 8e-83
 Identities = 223/688 (32%), Positives = 326/688 (47%), Gaps = 103/688 (14%)

Query: 30  SFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAV 89
           +F   DIQ  +  + R   +  +VDP V+G + + S   +   Q Y   L+ L + GF+V
Sbjct: 93  NFVDADIQAVVRALSRATGQQFLVDPRVKGNLTLVSEGQVPAHQAYDMLLAALRMQGFSV 152

Query: 90  VEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLIDN 149
           V++  GV +V+   DAK    P+ +    A    + T+   ++  +   L P+LR ++  
Sbjct: 153 VDV-GGVAQVVPEADAKLLGGPIYT----AGSSGMQTRTFRLQYENAVNLIPVLRPIVSP 207

Query: 150 AGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVE 209
               N   Y   N I+IT  A  + R+A+II  +D     + +VV + N  A ++  +V 
Sbjct: 208 NNPINA--YPGNNSIVITDYAENLARVAQIINGIDTPSAIDTDVVRVQNGIAVDIAAMVS 265

Query: 210 ALNKTTDAQNTPEFLKPKFVADERTNSILI-SGDPKVRERLKRLIKQLDVEMAAKGNNRV 268
            L +T  A  T    K   + D R+NSI+I SG P+  E  + LI +LD   +   N  V
Sbjct: 266 ELLETQGADQTQ---KINVIGDPRSNSIIIRSGSPERTELARNLIYKLDNAQSNPSNMHV 322

Query: 269 VYLKYAKAEDLVEVLKGV-----------------------------SENLQAEKGT--- 296
           VYL+ A+A  L + L+G+                             + N Q   GT   
Sbjct: 323 VYLRNAQAGKLAQSLRGLLTGESDSGVSDDARGKLSAMGGNGKNTEGTSNAQNSSGTPTG 382

Query: 297 ----------------------GQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVI 334
                                  Q T+     V I A A TN+L+++AP  +   + EVI
Sbjct: 383 SGVQSGYGQSTGSTTGTSGTSQDQDTSFSAGGVTIQADATTNTLLISAPDPLYRNLREVI 442

Query: 335 GQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGAS--IGNVMIGLEE 392
             LD RRAQV+IE+LIVE+ E D    GVQW         Q GN G     G V +G   
Sbjct: 443 DMLDQRRAQVVIESLIVEVGEDDATEFGVQW---------QAGNLGGKGGFGGVNLGGSG 493

Query: 393 AKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSN 452
              T  +K   D             KG    L      I G    +   D   L  A+ +
Sbjct: 494 VNSTPTSKTSIDV----------LPKGLNVGLVDGTVDIPGIGKVL---DLKVLARALKS 540

Query: 453 DSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTA---GSNNDNPFQTVDRKEVGIKLK 509
              +N+LS+P++  +DN  AS  VG+ +P +TGS     G  ++NPFQTV R+EVG+KL 
Sbjct: 541 KGGTNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLN 600

Query: 510 VVPQINEGNSVQLNIEQEVSNV-LGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDER 568
           V PQI+EG +V+L+I QEVS V   A+        KR ++TS+++ DGQ++VLGGL+ + 
Sbjct: 601 VRPQISEGGTVKLDIYQEVSTVDERASVTAGTVTNKRAIDTSILLDDGQIMVLGGLLQDG 660

Query: 569 ALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIR 628
             +S   VP L DIP LG LFR+    V K NLMVF++P IIRD      IT  +Y ++R
Sbjct: 661 YSQSNDAVPWLSDIPGLGALFRNEKRSVSKTNLMVFLRPYIIRDSGAGRSITLNRYEFMR 720

Query: 629 AEQLFRAEKGLR-----LLDDASVPVLP 651
                RA+ GL+      + D   P LP
Sbjct: 721 -----RAQGGLQPEHSWAMPDVQAPQLP 743