Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Type IV pilus biogenesis protein PilQ from Variovorax sp. SCN45

 Score =  119 bits (297), Expect = 7e-31
 Identities = 98/359 (27%), Positives = 162/359 (45%), Gaps = 31/359 (8%)

Query: 271 LKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKR---NEVMIAAHADTNSLVLTAPQDIM 327
           L Y KA  + + L G   +     G G   T+ R       + A + TN L ++     +
Sbjct: 377 LNYTKAIAIAQGLTGTGASAGGGGGGGGGGTTSRILSPRGSVIAESRTNQLFVSDIPSRL 436

Query: 328 NAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGN---TGASI- 383
             + ++I +LDI   QVLIEA IVE ++  G +LGV+ G    G VI   N   T  S+ 
Sbjct: 437 AQIADLIQKLDIPVRQVLIEARIVEASDTFGKSLGVKLG----GGVINRNNSFGTWPSVT 492

Query: 384 --GNVMIGLEEAKDTTQTKAVYD--------TNNNFLRNETTTTKGDYTKLASALSSIQG 433
             G           TTQT             T++NF+        G      S   S+  
Sbjct: 493 GGGTTSTSTSTGSTTTQTSTTTSPTVTFGSPTSSNFINLPAGDAGGTGNSAGSFAFSLFN 552

Query: 434 AAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNND 493
           ++ S  +      I+A+  D    ++SSP +   D  +A    GEE+P    +++G+ + 
Sbjct: 553 SSFSRMLN---LEISALEADGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSSGATS- 608

Query: 494 NPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVMV 553
                +  ++  +KL+V PQI    ++ L ++    +  G N +       + + T V+V
Sbjct: 609 -----ISFRKAVLKLEVTPQITPEGNIILTLDVS-KDARGVNTSAGPAINTKHVQTEVLV 662

Query: 554 QDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRD 612
           ++G  +V+GG+ +      ES+VP+LG++P LG LFR       K  ++VFI P +I D
Sbjct: 663 ENGGTVVIGGIFELTETNDESRVPVLGEVPYLGALFRKRERVANKTEMLVFITPKMITD 721



 Score = 26.6 bits (57), Expect = 0.004
 Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 220 TPEFLKPK--FVADERTNSILISGDPKVRERLKRLIKQLDV 258
           T   L P+   +A+ RTN + +S  P    ++  LI++LD+
Sbjct: 408 TSRILSPRGSVIAESRTNQLFVSDIPSRLAQIADLIQKLDI 448