Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 763 a.a., General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) from Variovorax sp. SCN45

 Score =  277 bits (708), Expect = 2e-78
 Identities = 211/688 (30%), Positives = 341/688 (49%), Gaps = 92/688 (13%)

Query: 30  SFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAV 89
           +F   DI+     +     + ++VDP V+G +++ +   +     ++ F S L + GFAV
Sbjct: 47  NFANADIEAVARTMAVVTGRDVVVDPRVKGTMNLVTDRAIQPAAAFNQFASALRLQGFAV 106

Query: 90  VEMDNGVLKVIKSKDAK--TSAIPVLSGEERANG-DEVITQVVAVKNVSVRELSPLLRQL 146
           VE D G+ KV+   DAK  +SA+    G   ++G ++++TQ+  +   S   L P+LR L
Sbjct: 107 VEAD-GLYKVVPEADAKLQSSAVNTSIGAVSSSGSNQIVTQIFRLNYESPNSLLPVLRPL 165

Query: 147 IDNAGAGNVVHYDPAN-IILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMV 205
           I      N ++ +P N  ++IT  A  + RLA II  +D     ++EV++L ++ A++MV
Sbjct: 166 IP---PNNTINVNPGNNSLVITDYADNMRRLARIIASLDVPNASDVEVIQLKHSIASDMV 222

Query: 206 RIVEALNKTTDAQN---------TPEFLKPKFVADERTNSILISGDPKVRERLKR-LIKQ 255
            ++  L + + +           T    +   +AD R+NS+++      R +L R L+++
Sbjct: 223 PLISRLIEGSGSGAPGTAAAPGATDASFRTTLLADPRSNSLILRAANPARVQLVRTLVEK 282

Query: 256 LDVEMA-----AKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEV--- 307
           LD + A     A GN  VVYLK A A  L   L+      Q    +GQP  +  + V   
Sbjct: 283 LDRQPAEGSNGAAGNIYVVYLKNADAVRLAATLRAAMAANQQTSASGQPGAAGSSPVPQQ 342

Query: 308 -----------------------------------MIAAHADTNSLVLTAPQDIMNAMLE 332
                                               I A   TNSL++TAP+     M  
Sbjct: 343 SAPQAMQVNLSGGQNGGSAAASAPLNNANQPSTGGQIQADPTTNSLIITAPEPQYRQMRA 402

Query: 333 VIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEE 392
           VI +LD RRAQV+IEALIVE++     N GVQW S    + +   N+  +  N++  L +
Sbjct: 403 VIDKLDGRRAQVMIEALIVEVSAKKAANFGVQWQSALGNNAVIGTNSSLASANIL-ALTQ 461

Query: 393 AKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSN 452
           A  T     +            T + G    +A  +           +G   A+ N  ++
Sbjct: 462 ALATKNVAGI------------TPSPGLNLGIAGKIGG------QYILG---AIANFFNS 500

Query: 453 DSSSNILSSPSITVMDNGEASFIVGEEVPVITG---STAGSNNDNPFQTVDRKEVGIKLK 509
           D  +N+LS+P++  +DN EA  ++G+ VP +TG   ST+GS   NPF TV+RK+VG+ L+
Sbjct: 501 DGDANVLSTPNLLTLDNEEAKIVIGQNVPFVTGQYASTSGSVGINPFTTVERKDVGLTLR 560

Query: 510 VVPQINEGNSVQLNIEQEVSNVLGANGAVDVRFA---KRQLNTSVMVQDGQMLVLGGLID 566
           V P INE  +V++ I QE S V   N A D       KR + +SV+V+DG +++LGGL+ 
Sbjct: 561 VRPTINENGTVKMTIFQETSTV-DQNTAKDPNGPTTNKRSIESSVLVEDGGLVMLGGLLS 619

Query: 567 ERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNY 626
           +    +  KVP+ GDIP+LG LF++      K NLM+F++P ++RDG +       +Y+ 
Sbjct: 620 DDYGNTVEKVPVAGDIPVLGNLFKNEVRTRNKSNLMMFLRPAVMRDGASTQAFAYDRYDE 679

Query: 627 IRA--EQLFRAEKGLRLLDDASVPVLPK 652
           IR   ++   +   + L    S PVLP+
Sbjct: 680 IRGMQQRTQPSTDNIMLRGVDSAPVLPE 707