Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 578 a.a., type IV pilus secretin PilQ from Vibrio cholerae E7946 ATCC 55056

 Score =  130 bits (327), Expect = 2e-34
 Identities = 108/389 (27%), Positives = 187/389 (48%), Gaps = 54/389 (13%)

Query: 235 NSILISGDPKVRERLKRLIKQLDV-EMAAKGNNRVVYLKYAKAEDLVEVLKGVSE-NLQA 292
           N ILI+   ++  R K+ +++  + E      + ++ + +AKA D+  ++ G    N+ +
Sbjct: 229 NVILIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLS 288

Query: 293 EKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVE 352
           E+G+            I+    TNSL++    D +  + E+I  LDI   QV IEA IV 
Sbjct: 289 ERGS------------ISIDERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVT 336

Query: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412
           + EG+   LGV+WG + +             G+  +G     +  Q   + D       +
Sbjct: 337 VKEGNLEELGVRWGVMSTN------------GSHSVGGSIESNLWQKGLLAD-------D 377

Query: 413 ETTTTKGDYTKLASALSSIQGAAVSIA-MGDWTAL---INAVSNDSSSNILSSPSITVMD 468
           E    +     LAS  ++    A  +A +G  T L   ++A+ N+S + I+SSP +   +
Sbjct: 378 EFPVDEFLNVNLASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTN 437

Query: 469 NGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIE--- 525
              A    G E+P +  S++G++      TV  K+  + LKV PQI   N + L++    
Sbjct: 438 KQPAYIEQGTEIPYLESSSSGAS------TVAFKKAVLSLKVTPQITPDNRLVLDLSVTQ 491

Query: 526 ----QEVSNVLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGD 581
               + V    G   ++D +    ++ T V+V +G+ +VLGG+       S  KVPLLGD
Sbjct: 492 DRRGETVKTGTGEAVSIDTQ----RIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGD 547

Query: 582 IPLLGQLFRSTSSQVEKKNLMVFIKPTII 610
           +P+LG LFR T  Q+ K  L++F+ P ++
Sbjct: 548 LPVLGALFRRTYEQMGKSELLIFVTPKVV 576



 Score = 37.7 bits (86), Expect = 2e-06
 Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 20/170 (11%)

Query: 120 NGDEVITQVVAVKNVSVR-------ELSPLLRQL--IDNAGAGNVVHYDPANIILITGRA 170
           NG  ++     V N+++R       ++  ++ Q+  +D    GNV+   P   + +  + 
Sbjct: 186 NGFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQ 245

Query: 171 AVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVA 230
           A+     E  R  ++ GD + E++++N A A+++  ++                +     
Sbjct: 246 AL-----EKARLAEELGDLKSEIIKINFAKASDIAAMIGGEGNVNMLSE-----RGSISI 295

Query: 231 DERTNSILISGDPKVRERLKRLIKQLDVEM-AAKGNNRVVYLKYAKAEDL 279
           DERTNS+LI   P     ++ +I+ LD+ +   +   R+V +K    E+L
Sbjct: 296 DERTNSLLIRELPDNIAVIREIIESLDIPVKQVQIEARIVTVKEGNLEEL 345