Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 559 a.a., pilus (MSHA type) biogenesis protein MshL from Vibrio cholerae E7946 ATCC 55056

 Score =  112 bits (281), Expect = 4e-29
 Identities = 87/311 (27%), Positives = 151/311 (48%), Gaps = 44/311 (14%)

Query: 318 LVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQY 376
           L L A  D +  + E +G    R   QV++EA I+E+   DG   G+ W    S +   Y
Sbjct: 251 LTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANY 310

Query: 377 GNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAA- 435
                SI                    D+N N +   T+   G       A+ ++ G   
Sbjct: 311 KIGSGSI------------------TQDSNGNPI---TSVLPG-----LDAIGNLLGGQS 344

Query: 436 -VSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVIT--GSTAGSNN 492
            V I+ G + A+I+ ++     N+LSSP +T  +N +A   VG +   +T   S  G+ +
Sbjct: 345 NVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSVVGTGD 404

Query: 493 D---NPFQTVDRKEVGIKLKVVPQINEGNSVQLNI-------EQEVSNVLGANGAVDVRF 542
           +   +P  T+     GI L V PQI++  +V L++       EQ+   +L  +  +++  
Sbjct: 405 NAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPL 464

Query: 543 AK---RQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKK 599
           A+   R+ ++ +  +DG ++V+GGL+    ++  SKVP LGD+P LG LFR+T+   +K 
Sbjct: 465 ARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKT 524

Query: 600 NLMVFIKPTII 610
            L++ +KPT++
Sbjct: 525 ELVILLKPTVV 535