Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 748 a.a., General secretion pathway protein D from Sphingobium sp. HT1-2

 Score =  313 bits (801), Expect = 2e-89
 Identities = 221/697 (31%), Positives = 355/697 (50%), Gaps = 67/697 (9%)

Query: 16  LLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYY 75
           +L+ P+    + + + +  DI+ FI    R   +T I+D  V+GKV V +   L++ +Y+
Sbjct: 15  VLAAPVPGHAQQTLNVRDADIRAFIQDAARVTGRTFIIDNRVQGKVSVVTDRPLSKSEYF 74

Query: 76  SFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVS 135
              LS L   G   V    G  ++  +  A      V      A  +  +T+V  +++V 
Sbjct: 75  EIVLSTLRANGLVAVPAPGGAYRIQPADGAAGQPSAV---GRAATRNSFVTEVFRLRSVD 131

Query: 136 VRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVE 195
              +   LR LI   G   V      N I++   A  V R+ ++I RVD+      ++V 
Sbjct: 132 AASVLETLRPLISKEGT--VTANRAGNSIVVADYADNVARIRQVIARVDR-DTSSTQMVM 188

Query: 196 LNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQ 255
           L NA A E+   ++AL ++   +N         V  + +N+I I GD     RL  + ++
Sbjct: 189 LKNAGAREIATSLQALVQSGGGENGAP-AAASVVPIDSSNAIAIRGDVNTVTRLANMARE 247

Query: 256 LDVEMAAKGNNRVVYLKYAKAEDLVEVLKG---------VSENLQA-------------- 292
           LD + A+    RV +L++A AE L+ VL+          V+ ++ A              
Sbjct: 248 LDRQAASGTEIRVYWLEHADAEKLLPVLQQLIGQSSSSPVTSSVPAAGASGGAGGGAAPA 307

Query: 293 ----------EKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRA 342
                       G+     S R   ++  +   N++++ A  D+   + E I Q+D RR 
Sbjct: 308 SAAAAPVAAGSSGSSGSGISTRGPAIVTRYEGANAIIVAANSDVQRMLGETIRQIDTRRE 367

Query: 343 QVLIEALIVEMAEGDGINLGVQW--GSLESG-SVIQYGNTGASI-------GNVMIGLEE 392
           QVL+EA+IVE+++     LGVQ+  GS  +G +   Y N   S+       G   +G  +
Sbjct: 368 QVLVEAIIVEISDAAAKKLGVQFLLGSTSTGFAATNYSNASPSLITIAGAYGATKLGTTK 427

Query: 393 ----AKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAM-GDWTALI 447
               A D T T     TN++     ++ T+     LASA   + G    I   G + A+I
Sbjct: 428 TTVVAADGTTTTTETQTNSDLA---SSLTQAAVDSLASATGIVGGLGTQIGKNGIFGAII 484

Query: 448 NAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIK 507
           NAV +D+ SN+LS+PS+  +DN +AS +VG++VPV TG     N DN F+TV R++VGIK
Sbjct: 485 NAVKSDTESNLLSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGIK 544

Query: 508 LKVVPQINEGNSVQLNIEQEVSNVLG--ANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLI 565
           L+V PQIN G +++L ++QEVS+V G  +N + D+   KR++ T+V V DG++L LGGL+
Sbjct: 545 LEVKPQINTGGAIKLFLKQEVSSVAGPVSNSSSDLIINKREIETTVTVDDGEILALGGLL 604

Query: 566 DERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYN 625
           D+   ++  ++PLL DIP +G+LF+S S    K NLMVFI+PTI+R    A  +TQ++Y 
Sbjct: 605 DDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILRTKEDAQRLTQQRYG 664

Query: 626 YIRAEQLFRAEKGLRLLDD-------ASVPVLPKFGD 655
           Y+R  QL R+      +D+       A  P+ P+ GD
Sbjct: 665 YVRGMQLQRSPDSEPTIDELVRDYMGAQPPIAPQPGD 701