Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 412 a.a., type 4 pili biogenesis protein from Pseudomonas putida KT2440

 Score =  111 bits (278), Expect = 6e-29
 Identities = 103/380 (27%), Positives = 163/380 (42%), Gaps = 70/380 (18%)

Query: 240 SGDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQP 299
           S D +V + L   ++ L  E+          + +AKA DL ++L      L   +G G P
Sbjct: 97  SADARVSQALDAHLQPLRRELLP--------IHHAKAADLAQLL------LAGLEGDGIP 142

Query: 300 TTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGI 359
             S      ++    TN+LV+  P D +  M +++ QLD+   QV IEA IVE       
Sbjct: 143 PAS------LSVDERTNTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEK 196

Query: 360 NLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKG 419
           +LGV+WG    G  ++ G        V +GLE A  +     +               +G
Sbjct: 197 SLGVRWGGPLYGEKLRPGKELF----VDLGLERAGSSIGLGLL---------------RG 237

Query: 420 DYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEE 479
           D       L  ++              ++A+    +  I+S P +   D   A  + G E
Sbjct: 238 D------VLLDLE--------------LSAMEKSGNGEIISQPKVVTADKETARILKGTE 277

Query: 480 VPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNI---EQEVSNVLGANG 536
           VP    S +G+ +      V  +E  + L+V PQI   N V + +   + E   V   N 
Sbjct: 278 VPYQETSQSGATS------VSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNN 331

Query: 537 AVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQV 596
              +R  K ++N  V V DG+ +V+GG+          KVP  GD+P +G+LFR  + Q 
Sbjct: 332 VPPIR--KNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQE 389

Query: 597 EKKNLMVFIKPTIIRDGVTA 616
           +K  L+VF+ P I+ D   A
Sbjct: 390 KKSELLVFLTPRIMSDQAIA 409



 Score = 29.6 bits (65), Expect = 3e-04
 Identities = 25/102 (24%), Positives = 50/102 (49%), Gaps = 13/102 (12%)

Query: 162 NIILITGRAAVVNRLAEIIRRVDQAGDKEI-----EVVELNNASAAEMVRIVEALNKTTD 216
           N++L+   A    + A+   RV QA D  +     E++ +++A AA++ +++ A     +
Sbjct: 83  NVLLVAPAAEFAAQSADA--RVSQALDAHLQPLRRELLPIHHAKAADLAQLLLA---GLE 137

Query: 217 AQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDV 258
               P         DERTN++++         +++L+ QLDV
Sbjct: 138 GDGIPP---ASLSVDERTNTLVVHLPADRLAEMRQLVAQLDV 176