Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 621 a.a., putative Secretion protein from Pseudomonas putida KT2440

 Score =  101 bits (252), Expect = 9e-26
 Identities = 111/473 (23%), Positives = 191/473 (40%), Gaps = 74/473 (15%)

Query: 155 VVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDK-----EIEVVELNNASAAEMVRIVE 209
           V+  DP N   +T R+ + N  A   +   Q   K      +E  + N  +  E++  V 
Sbjct: 149 VLRLDPQNQKGMTLRSDIENVQARTAQPYPQLRSKLERPVTLEFRDANLKTIFEVLSQVA 208

Query: 210 ALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEMAAKGNNRVV 269
            +N   D    P+     FV + R           + + +  L++Q  +      +N V+
Sbjct: 209 GINFIFDKDLRPDMKATIFVREVR-----------IEDAIALLLEQNQLRQKIVNDNTVM 257

Query: 270 YLKYA--KAEDLVEVLKGVSENLQAEKGTGQ---PTTSKRNEVMIAAHADTNSLVLTAPQ 324
               +  K +D  E++         +  T      T  K  +V +      N+L +    
Sbjct: 258 VYPDSPQKTKDYQELVMRTFYLTSIDANTALNMVKTMLKTRDVFVDERL--NTLTMRDTS 315

Query: 325 DIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIG 384
           D +    +++   D    +V++E  ++E+A    ++LG+QW                   
Sbjct: 316 DAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRILDLGLQWP------------------ 357

Query: 385 NVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWT 444
                                 N F      +  G+   +   L  I  + +SIA     
Sbjct: 358 ----------------------NTF---GVLSDDGNPVSVLDQLKGINSSRISIAPAP-Q 391

Query: 445 ALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPF-QTVDRKE 503
           A INA   D   N L+SP I V +  +A   +G+ VP+I+ ++  S       ++V   +
Sbjct: 392 AKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLD 449

Query: 504 VGIKLKVVPQINEGNSVQLNIEQEVSNVLGAN----GAVDVRFAKRQLNTSVMVQDGQML 559
           VG+KL+V P ++  N V + +  EVSN         G + V+   R   TS+ + DG+  
Sbjct: 450 VGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDGETQ 509

Query: 560 VLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRD 612
           VL GL+      S +K+P LGDIP LG+LF S    + K  L++ I P I+R+
Sbjct: 510 VLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRN 562