Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., Type II secretion pathway protein XcpQ from Pseudomonas putida KT2440

 Score =  281 bits (718), Expect = 8e-80
 Identities = 197/627 (31%), Positives = 328/627 (52%), Gaps = 101/627 (16%)

Query: 27  FSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYG 86
           +  +F  T++ EFI+ V R    T IVDP V+GKV VR+ D  + +  Y  FL+ L   G
Sbjct: 33  YEVNFVDTELGEFIDSVSRITGTTFIVDPRVKGKVTVRTVDLHDADAIYDIFLAQLRAQG 92

Query: 87  FAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANG-DEVITQVVAVKNVSVRELSPLLRQ 145
           +A V++ NG +K++  + A+   +PV +G ++  G D V T+V +V+N +  ++  +L+ 
Sbjct: 93  YATVDLPNGSVKIVPDQAARLEPVPVEAGGQQGEGSDSVATRVFSVRNAASEQVLGILKP 152

Query: 146 LIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQ----AGDKEIEVVELNNASA 201
           LID    G +  Y  A+ +++T   + + R+A ++R++D+     G    +V+ L +A+A
Sbjct: 153 LID-PRVGVITPYPAAHQLVVTDWRSNLERIASLLRQLDRPQEVPGSGSTQVIYLRHANA 211

Query: 202 AEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEMA 261
            E+V+++  L++                  E    +  +G+ + ++R         V  A
Sbjct: 212 GEVVKVLRGLSQ------------------EGAVPVEGAGEAEGKDR--------PVVPA 245

Query: 262 AKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLT 321
           A G+   + L+Y +  + V V+ G    L A +   +    +R +V++ A          
Sbjct: 246 AGGSG--IRLEYEEGTNAV-VMVGPDSELAAYRAIVEQLDIRRAQVVVEA---------- 292

Query: 322 APQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLE---SGSVIQYGN 378
                      +I ++    AQ L                GVQW   +      ++ +G+
Sbjct: 293 -----------IIAEVSDSSAQEL----------------GVQWLFADEKFGAGIVNFGS 325

Query: 379 TGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSI 438
            G +I ++              A    +N  L +  +TT G     A+A     G   + 
Sbjct: 326 NGVNIASI------------AGAAASGDNEALGDLLSTTTG-----ATAGIGHFGGGFNF 368

Query: 439 AMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQT 498
           AM     L+NA+   S  N+LS+P++  +DN EAS +VG+EVP +TGS    NN NP+QT
Sbjct: 369 AM-----LVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVT-QNNANPYQT 422

Query: 499 VDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDVRFAKRQLNTSVMVQDGQM 558
           ++RKEVG+KL++ PQIN  NSV+L+I QEVS++   + A DV   KR++ T VMV+D  +
Sbjct: 423 IERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADTSSASDVITNKREIKTKVMVEDNGL 482

Query: 559 LVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADG 618
           ++LGGLI +    S+ +VPLLGDIP LG+LFRS +++  K+NLMVFI+P I+RDG +  G
Sbjct: 483 VILGGLISDELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILRDGPSLAG 542

Query: 619 ITQRKYNYIRAE---QLFRAEKGLRLL 642
           +++ KY  ++     QL    +G RLL
Sbjct: 543 LSEDKYRTLQQTTPLQLPDLAEGTRLL 569