Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 740 a.a., Secretin XpsD from Pseudomonas lactucae CFBP13502

 Score =  135 bits (341), Expect = 5e-36
 Identities = 155/678 (22%), Positives = 275/678 (40%), Gaps = 112/678 (16%)

Query: 30  SFKGTDIQEFIN-IVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFA 88
           +F    I+  IN ++G  L +   +   V+G V   +   +N++Q  S   ++L     A
Sbjct: 104 NFADQPIEAVINSVMGDLLHENYSIAQGVKGNVSFSTSKPVNKQQALSILETLLSWTDNA 163

Query: 89  VVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSPLLRQLID 148
           +++  N  + +  ++      +P +   + ++G  +  ++  ++ +S  E+  LL+    
Sbjct: 164 MIKQGNRYVILPANQAVAGKLVPEMRVSQPSSG--LSARLFPLRYISATEMQKLLKPF-- 219

Query: 149 NAGAGNVVHYDPA-NIILITGRAAVVNRLAEIIRR--VDQAGDKEIEVVELNNASAAEMV 205
            A     +  DPA N++ + G    +    + I    VD      + V  L  AS AE++
Sbjct: 220 -ARENAFLLVDPARNVLSLAGTPEELANYQDTIDTFDVDWLKGMSVGVFGLQRASVAELM 278

Query: 206 RIVEALNKTTDAQNTPEFLKPKFVADERTNSIL-ISGDPKVRERLKRLIKQLDVEMAAKG 264
             ++ +            ++  F+  ERTNS++ IS  P+    +   I  +D     + 
Sbjct: 279 PELQKMFGPDSGMPLAGMVR--FLPIERTNSVVAISSQPQYLSEVGDWIHTIDEGGGNEP 336

Query: 265 NNRVVYLKYAKAEDLVEVLK---------------------------------------G 285
              V  ++  KA DL + L+                                       G
Sbjct: 337 QMYVYDVRNMKASDLAKYLRQIYGTGAIKDDAPAKVAPGLRTATLSSPGTNSTSGSTPGG 396

Query: 286 VSENLQ-------------------AEKGTGQPTTSKRNEV--MIAAHADTNSLVLTAPQ 324
           +S NL                    AE+GT     +K  +    I A   +N L++    
Sbjct: 397 LSNNLNGNQPAAEDEEQAPEAEQDNAEQGTRDDAPAKSLDAGTRITAQKSSNQLLVRTRP 456

Query: 325 DIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIG 384
                +   I +LD    QV IE  I+E+     ++LGVQW                   
Sbjct: 457 VQWKEIESAIKRLDNPPLQVQIETRILEVKLTGELDLGVQW------------------- 497

Query: 385 NVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWT 444
              +G      T+ T A             + ++G   +  + L +      S    +  
Sbjct: 498 --YLGRLAGNSTSTTVA-----------NASGSQGALGRGGAGLGAADSLFYSFVSSNLQ 544

Query: 445 ALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEV 504
             ++A+  +  + +LS+PS+ VM+N  A   VG+ +P+   +     +D    +V+  + 
Sbjct: 545 VALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTLSSVEYVQT 604

Query: 505 GIKLKVVPQINEGNSVQLNIEQEVSNV---LGANG--AVDVRFAKRQLNTSVMVQDGQML 559
           G+ L VVP+IN G  V ++I+Q+VS+       NG    + R + R ++T V VQ GQ +
Sbjct: 605 GVILDVVPRINPGGLVYMDIQQQVSDAQDQASTNGDTPANPRISTRSVSTQVAVQSGQTV 664

Query: 560 VLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGI 619
           +LGGLI +   ++ S VP LG IP L  LF STS   ++  L+V I P +I     A  +
Sbjct: 665 LLGGLIKQDNADTVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITPRVITSSSQARQV 724

Query: 620 TQRKYNYIRAEQLFRAEK 637
           T    +Y +  QL R EK
Sbjct: 725 TD---DYRQQMQLLRPEK 739