Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., Predicted secretion system X protein GspD-like from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 97.4 bits (241), Expect = 2e-24
 Identities = 74/306 (24%), Positives = 139/306 (45%), Gaps = 31/306 (10%)

Query: 316 NSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQ 375
           N +++    + +     ++  LD+   +V+++  ++E+       LG+++        I 
Sbjct: 305 NLMIIKDTAEAVRLAERLLSSLDMAEPEVMLDVEVLEVTRSRLQELGLRFPDQ-----IG 359

Query: 376 YGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAA 435
           YG    +I   ++                  NN +    TT  G   +    L +  G  
Sbjct: 360 YGRLQPNIATTIV------------------NNGVTQSNTTLGGQLAEGYVDLRNRSGLT 401

Query: 436 VSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNP 495
             +A    T  +N  S     N L++P I V +  +A   +G+++PV T  T  + N   
Sbjct: 402 SFVANPAIT--LNLRSEAGDGNTLANPRIRVKNREKAKIHIGDKLPVFT--TTSTANVGV 457

Query: 496 FQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL----GANGAVDVRFAKRQLNTSV 551
             +V   +VG+KL V P +   + V + ++ EVS+V+    G + ++  +   R   T +
Sbjct: 458 SSSVSYLDVGLKLDVEPNVYLDDEVGIKVQLEVSSVIREVTGPSNSLAYQIGTRSAGTVL 517

Query: 552 MVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIR 611
            ++DG+  VL GLI++    S +++P LGDIP +G+LF ST     K  +++ I P I+R
Sbjct: 518 RLRDGETQVLAGLINDEERSSANRLPGLGDIPAIGRLFSSTRDNNSKTEIVLLITPRIVR 577

Query: 612 DGVTAD 617
           +    D
Sbjct: 578 NVARPD 583