Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 650 a.a., type II secretion system secretin GspD from Pectobacterium carotovorum WPP14

 Score =  591 bits (1524), Expect = e-173
 Identities = 315/627 (50%), Positives = 434/627 (69%), Gaps = 31/627 (4%)

Query: 11  LLAGS--LLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDT 68
           LL+GS  L+++ LA + EFSASFKGTDIQEFIN V +NL KT+I+DPSV G + VRS+D 
Sbjct: 3   LLSGSVLLMASSLAWSAEFSASFKGTDIQEFINTVSKNLNKTVIIDPSVSGTITVRSYDM 62

Query: 69  LNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQV 128
           +NEEQYY FFLSVL+VYGF V+ MDN VLK+I+SKDAK++++P+ +  +   GDEV+T+V
Sbjct: 63  MNEEQYYQFFLSVLDVYGFTVIPMDNNVLKIIRSKDAKSTSMPLATDAQPGIGDEVVTRV 122

Query: 129 VAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGD 188
           V V NV+ R+L+PLLRQL DNAGAG+VVHY+P+N++L+TGRA V+ RL  I+ RVDQ GD
Sbjct: 123 VPVNNVAARDLAPLLRQLNDNAGAGSVVHYEPSNVLLMTGRAGVIQRLMTIVERVDQTGD 182

Query: 189 KEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRER 248
           + +  + L+ AS+ E+V++V  LNK  +    P  L    VADERTNS+L+ G+P  R+R
Sbjct: 183 RNVTSIPLSYASSTEVVKMVNELNKMDEKSALPGMLTANVVADERTNSVLVRGEPNSRQR 242

Query: 249 LKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVM 308
           +  ++KQLD + A +GN +V+YLKYAKA DLVEVL GV +++Q ++    P  + R ++ 
Sbjct: 243 VIDMVKQLDRQQAVQGNTKVIYLKYAKATDLVEVLTGVGDSIQTDQQNALP--ALRKDIS 300

Query: 309 IAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSL 368
           I AH  TNSL++ A  DIM  + +VI QLDIRR QVL+EA+I E+ + DG+NLGVQW + 
Sbjct: 301 IKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRPQVLVEAIIAEVQDADGMNLGVQWANK 360

Query: 369 ESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASAL 428
            +G V Q+ NTG  I  +M G ++                F R+ T  T        +AL
Sbjct: 361 NAG-VTQFTNTGLPITTMMAGADQ----------------FRRDGTLGTAA-----TTAL 398

Query: 429 SSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTA 488
               G A     G+W+ L+ A+S +S ++IL++PSI  +DN EA+F VG+EVPV+ GS  
Sbjct: 399 GGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQT 458

Query: 489 GSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGA----VDVRFAK 544
            ++ DN FQTV+RK VGIKLKV PQINEG+SV L IEQEVS+V  A  +    +   F  
Sbjct: 459 -TSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNT 517

Query: 545 RQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVF 604
           R +N +V+V  G+ +V+GGL+D+   ES SKVPLLGDIP+LG LFRS S++ +K+NLM+F
Sbjct: 518 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLMLF 577

Query: 605 IKPTIIRDGVTADGITQRKYNYIRAEQ 631
           I+P+IIRD       +  KY+   AE+
Sbjct: 578 IRPSIIRDRSQFQSASASKYHSFSAEE 604