Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., Type IV pilus biogenesis protein PilQ from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 92.0 bits (227), Expect = 4e-23
 Identities = 94/351 (26%), Positives = 151/351 (43%), Gaps = 66/351 (18%)

Query: 266 NRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQD 325
           NR + L+YA A +L +      E L + KGT            I     TN L+L   + 
Sbjct: 96  NRSISLQYADAGELAKA----GEKLLSAKGT------------IMVDKRTNRLLLRDNRA 139

Query: 326 IMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGN 385
            +  + + + Q+D+  AQV + A IV + E     LGV+W                    
Sbjct: 140 ALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKW-------------------- 179

Query: 386 VMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTA 445
                    D TQ  +V D           TT      +A+A S + G  +    G    
Sbjct: 180 ------TLADATQAGSVGDV----------TTLSSDLSVAAATSRV-GFNIGRINGRLLD 222

Query: 446 L-INAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEV 504
           L ++A+      +I++SP +       AS   G E+P        S+ ++   +V+ KE 
Sbjct: 223 LELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQV-----SSGESGATSVEFKEA 277

Query: 505 GIKLKVVPQINEGNSVQLNIEQEVSNVLG-----ANGAVDVRFAKRQLNTSVMVQDGQML 559
            + ++V P + +   ++L +     NV G     A+G V +   K+++ T V V+ G+ L
Sbjct: 278 VLGMEVTPTVLQKGRIRLKLHIS-QNVPGQVLQQADGEV-LAIDKQEIETQVEVKSGETL 335

Query: 560 VLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTII 610
            LGG+   +       VPLLGDIP LGQLFR    + E++ L+VFI P ++
Sbjct: 336 ALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 386



 Score = 25.4 bits (54), Expect = 0.005
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 194 VELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLI 253
           + L  A A E+ +  E L             K   + D+RTN +L+  +      L++ +
Sbjct: 99  ISLQYADAGELAKAGEKLLSA----------KGTIMVDKRTNRLLLRDNRAALAELEKWV 148

Query: 254 KQLDVEMA 261
            Q+D+ +A
Sbjct: 149 SQMDLPVA 156