Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 641 a.a., type II secretion system protein D from Enterobacter asburiae PDN3

 Score =  536 bits (1380), Expect = e-156
 Identities = 303/667 (45%), Positives = 430/667 (64%), Gaps = 51/667 (7%)

Query: 5   LKKSSW----LLAGSLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGK 60
           +KK  W    L A SL S  L  AN FSASFK TD++EFI+ VGRNL KTI+VDPSV+G 
Sbjct: 1   MKKFPWACVALTALSLYSGSLFAAN-FSASFKNTDVREFIDTVGRNLNKTILVDPSVQGT 59

Query: 61  VDVRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERAN 120
           V VR+++ L E++YY FFLSVL++YG +V+ MDNG++KV++S  A+ S  P+   +    
Sbjct: 60  VSVRTYNVLTEDEYYQFFLSVLDLYGLSVIPMDNGMVKVVRSSVARMSGAPIADSKNPGK 119

Query: 121 GDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEII 180
           GDEVIT+VV ++NV VREL+PLLRQL D +G GNVVH++P+N++L+TG+A+VVNRL +++
Sbjct: 120 GDEVITRVVRMENVPVRELAPLLRQLNDASGIGNVVHFEPSNVLLLTGKASVVNRLVDLV 179

Query: 181 RRVDQAGDKEIEVVELNNASAAEMVRIVEAL-NKTTDAQNTPEFLKPKFVADERTNSILI 239
           +RVDQ+G +  E+V L  ASA E+  ++  L N+    QN P+ L  K VAD+ TNS++I
Sbjct: 180 QRVDQSGVQRREIVPLRFASAKELSDMLNNLNNEEQKGQNAPQ-LATKVVADDETNSLVI 238

Query: 240 SGDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSENLQAEKGTGQP 299
           SG P  R+R + LI QLD E   +GN RV YLKYA A  +V VL G+ E L+ + G G+ 
Sbjct: 239 SGSPDARQRTRTLISQLDREQNNEGNTRVFYLKYANASKVVPVLTGIGEQLKDKAGGGKS 298

Query: 300 TTSK-RNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDG 358
             +    ++ I+A   TNSLV+TA  ++MN++ +VI +LDIRR QVL+EA+I E+ +G+G
Sbjct: 299 KAAPIAGDLNISADESTNSLVITAQPNVMNSLEKVIDKLDIRRPQVLVEAIIAEVQDGNG 358

Query: 359 INLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTK 418
           ++LGVQW S   G  +Q+G+TG  I  +                                
Sbjct: 359 LDLGVQWTSKHGG--VQFGSTGLPISQI-------------------------------- 384

Query: 419 GDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGE 478
               K +  + S  G A     GD+ AL+ A+S +  ++ILS+PS+  +DN EASF VG+
Sbjct: 385 ----KKSKVIGSYTGLATGFFNGDFGALMTALSTNGKNDILSTPSVVTLDNKEASFNVGQ 440

Query: 479 EVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVS---NVLGAN 535
           +VPV++GS   ++ DN F +V+RK VG KLK+VPQIN+G+ + L IEQEVS   N   A+
Sbjct: 441 DVPVLSGSQT-TSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDNTSTAD 499

Query: 536 GAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQ 595
            ++   F  R +N  VMV  GQ +VLGGL++    +S SKVPLLGDIP++GQLFR TS  
Sbjct: 500 ASLGPTFNTRTINNEVMVHSGQTVVLGGLMENVTKQSVSKVPLLGDIPVVGQLFRYTSQD 559

Query: 596 VEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEK-GLRLLDDASVPVLPKFG 654
             K+NLMVFI  T++RD       ++ KY  I+A Q  R E+  L ++++A  P+LP + 
Sbjct: 560 SAKRNLMVFIHTTVLRDDDNYGAASKEKYEQIQARQQQRMEEHKLGIVENADSPMLPAYP 619

Query: 655 DDRRHSP 661
              R +P
Sbjct: 620 SQSRAAP 626