Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., general secretion pathway protein D from Escherichia coli ECOR38

 Score =  684 bits (1764), Expect = 0.0
 Identities = 361/681 (53%), Positives = 497/681 (72%), Gaps = 22/681 (3%)

Query: 1   MKYWLKKSSWL----------LAGSLLSTPL-AMANEFSASFKGTDIQEFINIVGRNLEK 49
           +  W KK++ L          LA +L S+P+ A    F+A+FK TD++ FI  VG NL K
Sbjct: 8   LSVWRKKTTGLKTKKRLLALVLAAALCSSPVWAEEATFTANFKDTDLKSFIETVGANLNK 67

Query: 50  TIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSA 109
           TII+ P V+GKV +R+   LNE QYY  FL++LE  G+AVV M+N VLKV+KS  AK   
Sbjct: 68  TIIMGPGVQGKVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVEP 127

Query: 110 IPVLS-GEERANGDEVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITG 168
           +P++  G +   GDE++T+VV V+NVSVREL+P+LRQ+ID+AG+GNVV+YDP+N+I++TG
Sbjct: 128 LPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSAGSGNVVNYDPSNVIMLTG 187

Query: 169 RAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKF 228
           RA+VV RL E+I+RVD AG++  EV+ L+NASA+E+ R++E+L K +  +N P  LK + 
Sbjct: 188 RASVVERLTEVIQRVDHAGNRTEEVIPLDNASASEIARVLESLTKNS-GENQPATLKSQI 246

Query: 229 VADERTNSILISGDPKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVLKGVSE 288
           VADERTNS+++SGDP  R++++RLI++LD EM   GN++V YLKY+KAEDLV+VLK VS 
Sbjct: 247 VADERTNSVIVSGDPATRDKMRRLIRRLDSEMERSGNSQVFYLKYSKAEDLVDVLKQVSG 306

Query: 289 NLQAEKGTGQPTTSKRNEVM-IAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIE 347
            L A K   + T     EV+ IAA   +N+L++TAPQDIM ++  VI QLDIRRAQV +E
Sbjct: 307 TLTAAKEEAEGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIRRAQVHVE 366

Query: 348 ALIVEMAEGDGINLGVQWGSLESGSVIQYGN-TGASIGNVMIGLEEAKDTTQTKAVYDTN 406
           ALIVE+AEG  IN GVQW S ++G ++Q+ N T   IG +   + +AK    +  + +  
Sbjct: 367 ALIVEVAEGSNINFGVQWASKDAG-LMQFANGTQIPIGTLGAAISQAKPQKGSTVISENG 425

Query: 407 NNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITV 466
              +  +T    GD + LA  LS   G AV +  GDW AL+ AV NDSSSN+LS+PSIT 
Sbjct: 426 ATTINPDTN---GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITT 482

Query: 467 MDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQ 526
           +DN EA F+VG++VPV+TGST GSNN NPF TV+RK+VGI LKV PQINEGN+VQ+ IEQ
Sbjct: 483 LDNQEAFFMVGQDVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQ 542

Query: 527 EVSNVLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLG 586
           EVS V G   ++DV F +R+L T+V+  DG+++VLGGL+D++A ES +KVPLLGDIPL+G
Sbjct: 543 EVSKVEGQT-SLDVVFGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIG 601

Query: 587 QLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLRLLDDAS 646
            LF+ST+ + EK+NLMVFI+PTI+RDG+ ADG++QRKYNY+RAEQ++R E+GL L+   +
Sbjct: 602 NLFKSTADKKEKRNLMVFIRPTILRDGMAADGVSQRKYNYMRAEQIYRDEQGLSLMPHTA 661

Query: 647 VPVLPKFGDDRRHSPEIQAFI 667
            PVLP    ++   PE++AF+
Sbjct: 662 QPVLP--AQNQALPPEVRAFL 680