Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., DNA uptake porin HofQ from Dickeya dianthicola ME23

 Score =  101 bits (252), Expect = 6e-26
 Identities = 102/397 (25%), Positives = 184/397 (46%), Gaps = 81/397 (20%)

Query: 232 ERTNSIL-ISGDPKVRERLKRLIKQLDVEMAAKGNNRV------VYLKYAKAEDLVEVLK 284
           ER  S++ +  D  +++R ++       E+AAK   ++      V L+YA+A D+V  L+
Sbjct: 94  ERQGSVMMVYPDAYMKDRQRQ-----QEELAAKQRQQLPLQNLSVTLQYAEAADVVTSLQ 148

Query: 285 GVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEV---IGQLDIRR 341
                L  E+G+   T  KR          TN+L++   +D++ A+ ++   IG+LD   
Sbjct: 149 SQRGTLLTERGS--VTVDKR----------TNTLLV---RDVVAALEQIRPWIGELDKPL 193

Query: 342 AQVLIEALIVEMAEGDGINLGVQWG---SLESGSVIQYGNTGASIGNVMIGLEEAKDTTQ 398
           AQV + A IV ++      LGV WG   +  +G  +Q  N   S+              +
Sbjct: 194 AQVQLAAHIVTISSEHLKALGVNWGLGDAATTGQALQMNNFSVSL------------PVE 241

Query: 399 TKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNI 458
           + A+   N  F                  L+ + G  + + +        A+  ++   I
Sbjct: 242 SPAI---NAGF-----------------HLAKLNGRLLDLEL-------MALEQENEVEI 274

Query: 459 LSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGN 518
           ++SP +       AS   G E+P    S A  +      +++ KE  + ++V P+I  G 
Sbjct: 275 IASPRLFTAHQQTASIKQGTEIPYQVSSGASGST-----SIEFKEAVLGMEVTPRILHGG 329

Query: 519 SVQLN--IEQEVSN--VLGANGAVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERALESES 574
            + L+  I Q +    +    G+  +   K+++ T V VQDG+ +VLGG+  ++  + E 
Sbjct: 330 QITLSLLISQNMPGRAIKQGEGSEILAIDKQEIQTQVTVQDGETIVLGGIFQQQKNQGER 389

Query: 575 KVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIR 611
           +VP LG +P +GQ FRS + Q  ++ L++FI PT+I+
Sbjct: 390 QVPGLGALPGIGQWFRSDNQQHTRRELVIFITPTLIQ 426



 Score = 25.8 bits (55), Expect = 0.004
 Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 181 RRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFL---KPKFVADERTNSI 237
           R+ ++   K+ + + L N S    ++  EA +  T  Q+    L   +     D+RTN++
Sbjct: 113 RQQEELAAKQRQQLPLQNLSVT--LQYAEAADVVTSLQSQRGTLLTERGSVTVDKRTNTL 170

Query: 238 LISGDPKVRERLKRLIKQLDVEMA 261
           L+       E+++  I +LD  +A
Sbjct: 171 LVRDVVAALEQIRPWIGELDKPLA 194