Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., type II secretion system secretin GspD from Dickeya dianthicola ME23

 Score =  328 bits (841), Expect = 5e-94
 Identities = 202/648 (31%), Positives = 334/648 (51%), Gaps = 102/648 (15%)

Query: 19  TPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFF 78
           TP   + ++SASF+  +I+EF+    + L+K II+DPS+ G++ VRS+D LNE QY  FF
Sbjct: 38  TPENASKKYSASFREVEIKEFVATAAQILKKNIIIDPSITGQISVRSYDDLNENQYADFF 97

Query: 79  LSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRE 138
           ++V+E YG++VV++DN  L V+    +  +A    +   +     ++ ++  +  +S  E
Sbjct: 98  INVMEAYGYSVVKIDNHTLNVVPQAQSLRAA---WAEGNKGRSKNIVVRLARMNVLSGAE 154

Query: 139 LSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQA-GDKEIEVVELN 197
           L P+L  + +N+ A  + +Y   N+ + TGR  VV RL +I+ ++D A  D    V  ++
Sbjct: 155 LEPILGLIAENS-AVKLKYYSSGNLFIFTGREDVVERLVDIVNQIDNARADSSPTVFNVS 213

Query: 198 NASAAEMVRIVEAL--NKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQ 255
            A A+++ + +++   N T + +N P         ++ T +I++ G   +R  + RLI  
Sbjct: 214 QAKASDIAKSLQSTFRNLTPEDKNAP-----LIYGNDATRTIMVKGGAHLRAEISRLISA 268

Query: 256 LDVEMAAKGNNRVVYLKYAKAEDLVEVL-------------------------------- 283
           +DV       +RV +LKYA A  + ++                                 
Sbjct: 269 MDVPGQ---QSRVFFLKYADAVQMAKLFTNNNNPSGSPEPAGGNTMSMEAMLAQQSPGSM 325

Query: 284 -KGVSENLQAEKGTGQPTTSKR----------------NEVMIAAHADTNSLVLTAPQDI 326
             G   NL  +  +G  T +                   +  + A  D N+LV++AP   
Sbjct: 326 SSGQPANLDGQAASGGTTPAADFSNDSNSMFSDGDTLVRQTRVHADRDNNALVVSAPPAA 385

Query: 327 MNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNV 386
           M     +I QLD+R  QVL+EA++VE+ + +G+NLG+ WG+        YG +  +  NV
Sbjct: 386 MQQAASIIQQLDVRHEQVLVEAIVVEVQKAEGLNLGIAWGNKN------YGGSNFNSINV 439

Query: 387 MIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTAL 446
             G  +A                              L +AL   +G       G+W  L
Sbjct: 440 GNGFSQANP----------------------------LVNALKGTEGLVAGFYHGNWGTL 471

Query: 447 INAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGI 506
            NA+ ++ S+NI+++PS+  +DN  A F VG++VP++TGS   +NNDN F TV R+ +GI
Sbjct: 472 FNALESNKSNNIVATPSVVTLDNHRAEFNVGQDVPILTGSQT-TNNDNIFNTVQRRTIGI 530

Query: 507 KLKVVPQINEGNSVQLNIEQEVSNVLGA---NGAVDVRFAKRQLNTSVMVQDGQMLVLGG 563
           K  ++P+IN+  ++ L I QE+S++      N  +   F  R +N  V VQD + +V+GG
Sbjct: 531 KFSILPRINQSGTILLTISQEISSLSDTAQVNNNLGAVFNIRTVNNVVQVQDNETVVIGG 590

Query: 564 LIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIR 611
           L+D+   E+ +KVPLLGDIP LG +FR TS   +K+NLM+FI+P IIR
Sbjct: 591 LLDDEKKETVNKVPLLGDIPWLGNVFRYTSHNDDKRNLMLFIRPRIIR 638