Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., type II secretion system secretin GspD from Dickeya dianthicola ME23

 Score =  578 bits (1491), Expect = e-169
 Identities = 328/703 (46%), Positives = 442/703 (62%), Gaps = 86/703 (12%)

Query: 5   LKKS-SWL-LAGSLLSTPLAMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVD 62
           +KKS  WL L   LL +P   A EFSASFKGTDIQEFIN V +NL KT+I+DP+VRG + 
Sbjct: 6   IKKSWGWLGLTVLLLGSPYGWAAEFSASFKGTDIQEFINTVSKNLNKTVIIDPTVRGTIS 65

Query: 63  VRSFDTLNEEQYYSFFLSVLEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGD 122
           VRS+D +NE QYY FFLSVL+VYGF+VV MDNGVLKVI+SKDAK+S+IP+ + E+   GD
Sbjct: 66  VRSYDMMNEGQYYQFFLSVLDVYGFSVVPMDNGVLKVIRSKDAKSSSIPLANNEQPGVGD 125

Query: 123 EVITQVVAVKNVSVRELSPLLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRR 182
           E++T+VV + NV+ R+L+PLLRQL DNAGAG VVHY+P+N++L+TGRAAV+ RL +I+  
Sbjct: 126 ELVTRVVPLNNVAARDLAPLLRQLNDNAGAGTVVHYEPSNVLLMTGRAAVIKRLVDIVNT 185

Query: 183 VDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGD 242
           VD+ GD+E+  V L  ASA ++ ++V  LNKT +    P  +    VADERTNS+++SG+
Sbjct: 186 VDKTGDREMITVPLTYASAEDVAKLVNDLNKTDEKNALPSTMLANVVADERTNSVVVSGE 245

Query: 243 PKVRERLKRLIKQLDVEMAAKGNNRVVYLKYAKAEDLVEVL--KGVSENLQAEKGTGQPT 300
              R+R   +I+QLD +  A+G  +V+YLKYAKA DL+EVL   G S N  +       +
Sbjct: 246 ENGRQRAIEMIRQLDRKQVAQGGTKVIYLKYAKALDLIEVLAGNGTSGNRNSSSSNASRS 305

Query: 301 TSKR-----------------------------------------------------NEV 307
           +S R                                                      EV
Sbjct: 306 SSSRTSNSGLNSNNNSSGSTNSSGSSSSSSSSSSSMGFGSTFGSTSSSGGRTIVIQGKEV 365

Query: 308 MIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGS 367
            + AH  TNSL++TAP DIM  + +VI QLDIRR QVL+EA+I E+ + DG+NLG+QW +
Sbjct: 366 TVRAHDQTNSLIITAPPDIMRDLEQVINQLDIRRPQVLVEAIIAEIQDADGLNLGIQWAN 425

Query: 368 LESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASA 427
             +G + Q+ NTG  I   +IG ++                  R++ T T    T  ASA
Sbjct: 426 KRAG-MTQFTNTGIPISTAVIGTDQ-----------------FRSDGTLT----TAYASA 463

Query: 428 LSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGS- 486
           L S  G       G+W+ L+ A+S DS +++L++PSI  +DN EA+F VG+EVPV+TGS 
Sbjct: 464 LGSFNGITAGFYRGNWSMLLTALSRDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQ 523

Query: 487 -TAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVD----VR 541
            T GS N N F TV+RK VGIKL+V PQINEG+SV L IEQEVS+V  +N + +      
Sbjct: 524 TTVGSGN-NIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGAT 582

Query: 542 FAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNL 601
           F  R +N +VMV +G+ +V+GGL+D+  +ES  KVPLLGDIP LG LFRS S  V K+NL
Sbjct: 583 FNTRTVNNAVMVTNGETVVVGGLLDKTTIESNDKVPLLGDIPWLGSLFRSKSQSVNKRNL 642

Query: 602 MVFIKPTIIRDGVTADGITQRKYNYIRAEQLFRAEKGLRLLDD 644
           M+F++PTIIRD       +  KY     EQ  +  +G R+LD+
Sbjct: 643 MLFLRPTIIRDPGQFQEASINKYRSFNNEQQQQRGEGNRVLDN 685