Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., Type IV pilus biogenesis and competence protein PilQ precursor from Alteromonas macleodii MIT1002

 Score =  124 bits (312), Expect = 1e-32
 Identities = 98/350 (28%), Positives = 168/350 (48%), Gaps = 50/350 (14%)

Query: 271 LKYAKAEDLVEVLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAM 330
           + YAKA  L  +LK     + +E+G             +     TN+L++      ++  
Sbjct: 281 VNYAKAAALATILKSTEGGILSERGG------------VTVDERTNTLLIRDTLASIDEA 328

Query: 331 LEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGL 390
            + I  LDI   QVLIE+ +V + +     LGV+WG  +     +  + G S      G 
Sbjct: 329 RKTINALDIPVKQVLIESRMVTVLDDVDEQLGVRWGFSD-----RQDDNGVS------GS 377

Query: 391 EEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTAL-INA 449
            EA DT     V   +N    N   T         SA  SI     S+  G    L ++A
Sbjct: 378 LEAADTIAGGIVPSIDNRLNVNLPVT---------SAAGSIGFQIASLVDGTILDLELSA 428

Query: 450 VSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLK 509
           + +++   I++SP ITV +  EA    G E+P +  +++G+ +      V+ K+  + LK
Sbjct: 429 LESENKGEIIASPRITVANQHEAYIEQGTEIPYVQATSSGATS------VEFKKAVLSLK 482

Query: 510 VVPQINEGNSVQLNIE-------QEVSNVLGANGAVDVRFAKRQLNTSVMVQDGQMLVLG 562
           V P I   N + L++        + VS   G   A+D +    ++ T V+V++G+ +VLG
Sbjct: 483 VTPHITPDNRIILDLVVTQDTRGETVSTSTGDAVAIDTQ----EIKTQVLVENGETIVLG 538

Query: 563 GLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRD 612
           G+  + + +  SKVPL GD+P++G LFR++S   +K+ L++F+ P I+ +
Sbjct: 539 GIFQQTSSDGVSKVPLFGDLPVVGALFRNSSQLQQKRELLIFVTPKIVTE 588



 Score = 26.9 bits (58), Expect = 0.003
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 20/150 (13%)

Query: 118 RANGDEVITQVVAVKNVSV--------RELSPLLR-QLIDNAGAGNVVHYDPANIILITG 168
           + NG  ++T      NV++        + L  +LR + +D    GN++   PA  +    
Sbjct: 199 QVNGFNLVTTDTVTGNVTISLSGVPWDQALDMILRVKGLDKRLEGNILLIAPAEELSARE 258

Query: 169 RAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTPEFLKPKF 228
             A+ ++     ++V          + +N A AA +  I+    K+T+     E  +   
Sbjct: 259 TQALQSK-----KQVSDLASLHTVNIPVNYAKAAALATIL----KSTEGGILSE--RGGV 307

Query: 229 VADERTNSILISGDPKVRERLKRLIKQLDV 258
             DERTN++LI       +  ++ I  LD+
Sbjct: 308 TVDERTNTLLIRDTLASIDEARKTINALDI 337