Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Type 3 secretion system secretin from Acinetobacter radioresistens SK82

 Score =  124 bits (311), Expect = 2e-32
 Identities = 91/362 (25%), Positives = 162/362 (44%), Gaps = 30/362 (8%)

Query: 269 VYLKYAKAEDLVEVL-----------KGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNS 317
           + L YAKA D+ +++            G S N +A   +     S R  + I     TN+
Sbjct: 381 IQLNYAKAVDIEKLITQGRNSGNGSANGASNNTEALGDSVGSLLSPRGTISIDPR--TNT 438

Query: 318 LVLTAPQDIMNAMLEVIGQLDIRRAQVLIEALIVEMAEGDGINLGVQWGSLESGSVIQYG 377
           L++      ++ +  +I  LD+   QV++EA IV  +      +GV+WG L  G      
Sbjct: 439 LIINDTAQKLDQIRRMIDLLDVAVKQVMVEARIVRASTDFTKEMGVKWGILSQGIT---R 495

Query: 378 NTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVS 437
           N    +G     L   +D        D +  +          D    AS  S I    +S
Sbjct: 496 NNSLLVGGSETTLWNLRDP-------DDDGKYTIERPQNLNVDLGVTASGASRIAFGLIS 548

Query: 438 IAMGDWTALINAVSNDSSSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQ 497
           ++       ++A+  D    ++S+P +   D  +A    G ++P  +    G+N  +  +
Sbjct: 549 LSDFMLDLELSALQADGYGEVISTPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTE 608

Query: 498 TVDRKEVGIKLKVVPQINEGNSVQ--LNIEQEVSNVLGANGAVDVRFAKRQLNTSVMVQD 555
            VD     + L V P I     +Q  LNI  +        G + +   K ++NT+V+V +
Sbjct: 609 FVDAT---LSLNVTPSITPDGKIQMLLNITSDTPGNPTPTGQIAIN--KNEINTNVLVNN 663

Query: 556 GQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVT 615
           G+ +VLGG+ ++    +++KVP+LGD+P +G+LFR  +    K+ L++F+ P I+ D  T
Sbjct: 664 GETVVLGGIFEQETRNTQTKVPVLGDLPGVGRLFRRDAKSNNKRELLIFVTPRIVNDSAT 723

Query: 616 AD 617
            +
Sbjct: 724 GN 725