Pairwise Alignments

Query, 674 a.a., type II secretion system protein GspD from Vibrio cholerae E7946 ATCC 55056

Subject, 751 a.a., Secretin XcpQ from Acinetobacter radioresistens SK82

 Score =  355 bits (910), Expect = e-102
 Identities = 232/668 (34%), Positives = 354/668 (52%), Gaps = 74/668 (11%)

Query: 22  AMANEFSASFKGTDIQEFINIVGRNLEKTIIVDPSVRGKVDVRSFDTLNEEQYYSFFLSV 81
           A A  +  + +  D+  FIN V     K   VDP VRG V V S   LN+ + Y  FL V
Sbjct: 27  AYAQTWKINLRDADLTAFINEVADITGKNFAVDPRVRGNVTVISNKPLNKNEVYDLFLGV 86

Query: 82  LEVYGFAVVEMDNGVLKVIKSKDAKTSAIPVLSGEERANGDEVITQVVAVKNVSVRELSP 141
           L V G   +   N  +K++   + K+S +P       A GD+V+T+V+ ++N +  +L P
Sbjct: 87  LNVNGVVAIPSGN-TIKLVPDSNVKSSGVPY-DARRNARGDQVVTRVIWLENTNPNDLIP 144

Query: 142 LLRQLIDNAGAGNVVHYDPANIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASA 201
            LR L+      ++      N ++++ RA+ + +L  I+R +D  G  +IE + L ++ A
Sbjct: 145 ALRPLMPQFA--HLAAVAGTNALIVSDRASNIAQLETIVRNLDGTGQNDIEAITLQSSQA 202

Query: 202 AEMVRIVEALNKTTDAQNTPEFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEMA 261
            E++ ++E+++ T  A++     + + +AD RTN ILI GDP  R+R++ +I+ LDV  A
Sbjct: 203 EEVIGLLESMSSTGAAKDFSG-ARVRIMADNRTNRILIKGDPATRKRIRHMIEMLDVPSA 261

Query: 262 AK-GNNRVVYLKYAKAEDLVEVLKGVSE-------------------------------- 288
            + G  +V  LKYA A++L E+L+G+                                  
Sbjct: 262 DRLGGLKVFRLKYASAQNLSEILQGLVTGQAVNSNSNSNNSGSSNSINNLINNTANNNQG 321

Query: 289 -----------NLQAEKGTGQPTTSK--RNEVMIAAHADTNSLVLTAPQDIMNAMLEVIG 335
                      NL A   +GQ   S    N V I A  + N+LV+ A   +M  +   I 
Sbjct: 322 STGSGISTPGINLNANTNSGQNPISSFNANGVSIIADTNQNALVVKADPQLMREIESAIQ 381

Query: 336 QLDIRRAQVLIEALIVEMAEGDGINLGVQW--GSLESG-SVIQYGNTGASIGNVMIGLEE 392
           QLDIRR QVLIEA I+E+A  D   LGVQW  G + SG  ++ + N G+S+ ++  G   
Sbjct: 382 QLDIRRQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLVNFTNVGSSLASLAAG--- 438

Query: 393 AKDTTQTKAVYDTNNNFLRNETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSN 452
                     Y    + L N  +  +G    L        G+        + ALI A+ +
Sbjct: 439 ----------YLAGGSALANAASNLRGSSLLLGDYREGADGSRRL-----YGALIQALKD 483

Query: 453 DSSSNILSSPSITVMDNGEASFIVGEEVPVITGS-TAGSNNDNPFQTVDRKEVGIKLKVV 511
           ++ SN+LS+PSI  MDN EA  +VG+ VP +TGS T  +N  NP+ TV+RK+VG+ LKV+
Sbjct: 484 NTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVTTNANGVNPYTTVERKDVGVTLKVI 543

Query: 512 PQINEGNSVQLNIEQEVSNVLGANG-AVDVRFAKRQLNTSVMVQDGQMLVLGGLIDERAL 570
           P I E  +V+L +EQEVSNV    G A D+  +KR + T+V+ + GQ +VLGGLI + ++
Sbjct: 544 PHIGENGTVRLEVEQEVSNVQPNKGQATDLVTSKRAIKTAVLAEHGQTVVLGGLISDNSI 603

Query: 571 ESESKVPLLGDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIRDGVTADGITQRKYNYIRAE 630
            S   VP LG IP +G+LFRS S+  EK+NL+VFI PTI+ D      +TQR+Y+ + + 
Sbjct: 604 YSRQAVPGLGAIPGIGRLFRSDSNSNEKRNLLVFIHPTIVGDASDVRRLTQRRYDQLYSL 663

Query: 631 QLFRAEKG 638
           QL   + G
Sbjct: 664 QLAMDKDG 671