Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 606 a.a., GspE/PulE family protein from Rhodanobacter sp000427505 FW510-R12

 Score =  342 bits (876), Expect = 3e-98
 Identities = 176/389 (45%), Positives = 264/389 (67%), Gaps = 12/389 (3%)

Query: 119 DDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSR 178
           DD  ++ +++ +L  A ++ ASDIH+E   +T  IRFR+DG +++V      + + + +R
Sbjct: 210 DDRHVVHIVDWLLQYAFEQRASDIHLEPRRETGHIRFRIDGAMQKVFELPSPVMTAVTAR 269

Query: 179 VKVMAKLDIAEKRVPQDGRISLRI-GGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLH 237
           +K++A++D+AEKR PQDGRI  R  GGR V++R+S MP++ GE+VVMR+ D +    D  
Sbjct: 270 IKILARMDVAEKRRPQDGRIKTRSSGGREVELRISNMPTAFGEKVVMRIFDPDLVVKDFA 329

Query: 238 SLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEF 297
            LG +A+   ++R +++RPHGI+LVTGPTGSGK+TTLY+ L+ L + E N+ TVEDPIE 
Sbjct: 330 QLGFSANEAAHWRGMVERPHGIVLVTGPTGSGKTTTLYSTLKHLATPELNVCTVEDPIEM 389

Query: 298 DIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST 357
                 Q QV+  +++ FA G+R +LRQDPD++M+GEIRDLETAQ+AVQASLTGHLV+ST
Sbjct: 390 VSPEFNQMQVHAAIELDFAAGVRTLLRQDPDIIMIGEIRDLETAQVAVQASLTGHLVLST 449

Query: 358 LHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSK 417
           LHTN A  AVTRL D+G+  +LI S+L GV+AQRLVRTLCP CK+    D +   +    
Sbjct: 450 LHTNDAPSAVTRLLDLGVPHYLIQSTLTGVVAQRLVRTLCPHCKQVARQDPQAWTVLTHG 509

Query: 418 KKEPL--ILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEA-----GEQAMEKH 470
              P+   +++  GC +C H G+ GRTGI+E+L +   L+ ++ ++      G+ A+ + 
Sbjct: 510 WDVPVPPQVFQPVGCLECRHTGFLGRTGIYEMLKLSPRLRGMVSAQLDLGRFGQAALSEG 569

Query: 471 IRATTPSIRDDGLDKVRQGITSLEEVMRV 499
           +R     +R    D+V  G+T+ +EV+ V
Sbjct: 570 MR----PLRISAADQVAAGLTTAQEVLTV 594



 Score = 26.2 bits (56), Expect = 0.004
 Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 9/43 (20%)

Query: 437 GYRGRTGIHELL---------LVDDALQELIHSEAGEQAMEKH 470
           G RGR G+ ELL         L DDA Q  +   AG   +E H
Sbjct: 12  GRRGRLGLDELLATLVVDGYLLADDAKQVRMGVPAGRSTVELH 54