Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 557 a.a., Type II secretion system protein E from Xanthobacter sp. DMC5

 Score =  354 bits (909), Expect = e-102
 Identities = 190/447 (42%), Positives = 281/447 (62%), Gaps = 10/447 (2%)

Query: 64  LIELSQAEFESKLTQVYQRDSSEARQLMEDIGADSDDFFSLA-EELPQNEDLLESEDD-- 120
           ++  ++     K+T+        A  L E +GAD       A     + ED ++S  D  
Sbjct: 108 VVRAAEIVLGGKVTRAVASFEDIATALAERLGADEAAAREAAGPATARAEDDIDSLRDLA 167

Query: 121 --APIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSR 178
             AP+++ +N +  +A++  ASDIHI  F   L +R R+DG+LR + A +  L   ++SR
Sbjct: 168 SGAPVVRAVNDLFDKAMELRASDIHIGPFRTGLEVRLRIDGMLRPIHALADVLPQAVISR 227

Query: 179 VKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHS 238
           +K++A LDIAE+R+PQDG   L++G   +DVRV+ MP+ HGE  V+RLL ++   L +  
Sbjct: 228 IKILAGLDIAERRLPQDGAARLKLGRDEIDVRVAIMPTQHGESAVIRLLARDRGVLTVDK 287

Query: 239 LGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 298
           LG+  H+ +   +L+  PHG+++VTGPTGSGK+TTL   L  LN   R ILT+EDP+E++
Sbjct: 288 LGLAPHDRETLMKLLALPHGMVVVTGPTGSGKTTTLATILSVLNEPTRKILTIEDPVEYE 347

Query: 299 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTL 358
           I G+ Q+QV P++ +TFA  LR+ LRQDPDV+MVGE+RD ETA IAV A+LTGHLV++TL
Sbjct: 348 IRGVFQSQVRPQIGLTFAAALRSFLRQDPDVIMVGEVRDPETAHIAVHAALTGHLVLTTL 407

Query: 359 HTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEAD----KEQRKLF 414
           HT+TA  +V R+ D+G+E FL+ S+L  V+AQRLVR LC  CK P+       ++  +  
Sbjct: 408 HTDTAAASVPRMLDLGVEGFLLKSTLRAVIAQRLVRQLCERCKRPHTLSSSDVRDDPRYA 467

Query: 415 DSKKKEPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEK-HIRA 473
               K    +Y   GC +C   GYRGR G+ E+L + D ++E+I   AG  A+++  I  
Sbjct: 468 ALGLKAGETVYEPVGCERCGGAGYRGRIGVFEVLTLSDDIREMIDRHAGAAALDRAAIAG 527

Query: 474 TTPSIRDDGLDKVRQGITSLEEVMRVT 500
              ++ DDG+ K R G+TS  EV+RVT
Sbjct: 528 GMTTMLDDGVAKCRAGLTSAAEVLRVT 554