Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 563 a.a., general secretion pathway protein GspE from Pseudomonas simiae WCS417

 Score =  388 bits (996), Expect = e-112
 Identities = 204/432 (47%), Positives = 297/432 (68%), Gaps = 16/432 (3%)

Query: 74  SKLTQVYQRDSSEARQLMEDIGADSDDFFSLAEELPQNEDLLESEDDAPIIKLINAMLGE 133
           +++  + +R   + R  M  +  + D+     E++   E L +   +AP+I+L+N +L  
Sbjct: 140 NEVDTLIERYYGQGRSAMGTLIENLDEQGGAEEDI---EHLKDMASEAPVIRLVNLILQR 196

Query: 134 AIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKVMAKLDIAEKRVP 193
           A+++ ASDIHIE FE  L +R+R+DGVL +  AP    S+ ++SRVK+MA+LDIAE+R+P
Sbjct: 197 AVEQRASDIHIEPFENQLKVRYRIDGVLHDAEAPPASSSAAVISRVKIMARLDIAERRLP 256

Query: 194 QDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGMTAHNHDNFRRLI 253
           QDGRI LRI G+ +D+RVST+P+S GE VV+RLLD+   + D  SLG       +F  L+
Sbjct: 257 QDGRIMLRIQGKELDLRVSTVPTSFGESVVLRLLDRQTVQFDFPSLGFDGQRLASFLDLL 316

Query: 254 KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDM 313
           +RPHGI+LVTGPTGSGK+TTLY  L  LN++ER I+TVEDP+E+ ++GI Q QV P + +
Sbjct: 317 ERPHGILLVTGPTGSGKTTTLYTALSRLNTTERKIITVEDPVEYQLEGINQIQVKPAIGL 376

Query: 314 TFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM 373
            FA  LR+I+RQDPDV+M+GEIRDLET +IA+Q+SLTGHLV+STLHTN+A  ++TRL DM
Sbjct: 377 DFAGALRSIVRQDPDVIMIGEIRDLETCRIAIQSSLTGHLVLSTLHTNSAAASITRLMDM 436

Query: 374 GIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKE---QRKLFDSKKKEPLILYRATGC 430
           G+E +LI+S++ G+LAQRLVR L P  +  +EA  E   +  L    ++ P++LYR    
Sbjct: 437 GVESYLIASTVSGILAQRLVRRLDPVTRVAFEAPPELIAEHGLDRLTEQRPILLYRG--- 493

Query: 431 PKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHI-RATTPSIRDDGLDKVRQG 489
                  Y GR+ + ELL+++D L+ L+   A    +E+   RA   ++ ++GL +   G
Sbjct: 494 ------DYHGRSALTELLVMNDELRSLLMRHADAATLEQAARRAGLRTLYEEGLRQALAG 547

Query: 490 ITSLEEVMRVTK 501
           ITSLEEV+RVT+
Sbjct: 548 ITSLEEVLRVTR 559