Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 472 a.a., general secretion pathway protein GspE from Pseudomonas simiae WCS417

 Score =  455 bits (1170), Expect = e-132
 Identities = 242/445 (54%), Positives = 315/445 (70%), Gaps = 25/445 (5%)

Query: 64  LIELSQAEFESKLTQVYQRDSSEARQLMEDIGADSD--DFFSLAEELPQNEDLLESEDDA 121
           L ++   E +  LT  Y    S A      +GA  +  D   L +++P+  DLL+++D A
Sbjct: 48  LEQVRDDELDGLLTSAYADTGSAAAV----VGAAENEVDLDRLMQDMPEITDLLDTQDGA 103

Query: 122 PIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSLLVSRVKV 181
           P+I++INA+L +A ++ ASDIHIE +E    +R+RVDG LR+V++P + L   LVSR+K+
Sbjct: 104 PVIRMINALLTQAARDEASDIHIEPYETHSVVRYRVDGTLRDVVSPRKALHGALVSRIKI 163

Query: 182 MAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKNATRLDLHSLGM 241
           MA+LDIAEKR+PQDGRI+LR+ GR +D+RVST+P+ HGERVVMRLLDK A RL L +LGM
Sbjct: 164 MAQLDIAEKRLPQDGRIALRVAGRPIDIRVSTVPTGHGERVVMRLLDKQAGRLQLETLGM 223

Query: 242 TAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDG 301
                     LI++PHGI+LVTGPTGSGK+T+LYA L  L++S  NILTVEDP+E+D+ G
Sbjct: 224 APQLLARLDTLIRQPHGIVLVTGPTGSGKTTSLYAALARLDASTSNILTVEDPVEYDLPG 283

Query: 302 IGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN 361
           I Q QVN ++DMTF   LRAILRQDPD++M+GEIRDLETAQIAVQASLTGHLV++TLHTN
Sbjct: 284 ISQIQVNAKIDMTFGLALRAILRQDPDIIMIGEIRDLETAQIAVQASLTGHLVLATLHTN 343

Query: 362 TAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKKEP 421
            AV AV RL DMG+EPFL++SSLLGVLAQRLVR LCP CK+                ++P
Sbjct: 344 DAVSAVNRLIDMGVEPFLLASSLLGVLAQRLVRRLCPHCKQ----------------EDP 387

Query: 422 LI--LYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAMEKHI-RATTPSI 478
                +R  GC +CN  GY GRTGIHEL  VDD ++ LIH  A EQ +     RA   S+
Sbjct: 388 SAPGTWRPVGCAQCNQIGYSGRTGIHELFCVDDDVRSLIHQGANEQDLRLAARRAGMFSM 447

Query: 479 RDDGLDKVRQGITSLEEVMRVTKES 503
           R+DG   V  G T+ EE++RVT+++
Sbjct: 448 REDGERWVHSGATAPEEILRVTRDA 472