Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB from Variovorax sp. SCN45

 Score =  324 bits (831), Expect = 5e-93
 Identities = 181/464 (39%), Positives = 282/464 (60%), Gaps = 13/464 (2%)

Query: 45  PLSMEALVETKRVVKHAFQLIELSQAEFESKLTQVYQRDSSEARQLMEDIGADSDDFFSL 104
           P   + + E +R  + + + +  + A+ +    + +    S  R   +  G      F  
Sbjct: 136 PFLTDWIAEVERQARRSVRRVVANPADIQRYTAEFFALAKS-VRAAQKAGGNTGGASFEQ 194

Query: 105 AEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREV 164
             EL ++   L++ D + ++++++ +   A  + ASDIH+E   +   IRFR+DG+L   
Sbjct: 195 LVELGKSNKQLDANDQS-VVQVVDWLWQYAFDQRASDIHLEPRREQGVIRFRIDGILHPA 253

Query: 165 LAPSRKLSSLLVSRVKVMAKLDIAEKRVPQDGRISLR-IGGRAVDVRVSTMPSSHGERVV 223
                 + + +V+R+K++ ++D+ EKR P DGRI  R + G  V++R+ST+P++ GE++V
Sbjct: 254 YQMPMGVMNAMVARIKLLGRMDVVEKRRPLDGRIKTRNMRGDEVEMRLSTLPTAFGEKMV 313

Query: 224 MRLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNS 283
           MR+ D +    DL +LG   H+   + +L+ RP+GIILVTGPTGSGK+TTLY+ L+ + +
Sbjct: 314 MRIFDPDTAVKDLDALGFAQHDAQRWEQLVTRPNGIILVTGPTGSGKTTTLYSTLKRVAT 373

Query: 284 SERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQI 343
            E N+ TVEDPIE       QTQV P++D  F  GLRA++RQDPD++MVGEIRDL TA++
Sbjct: 374 EEVNVSTVEDPIEMIEPSFNQTQVQPQLDFGFTEGLRALMRQDPDIIMVGEIRDLATAEM 433

Query: 344 AVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEP 403
           AVQA+LTGHLV STLHTN A  A+TRL ++G+  +LI++ +LGVLAQRLVRTLCP CK+P
Sbjct: 434 AVQAALTGHLVFSTLHTNDAPSAITRLMELGVPSYLINAVMLGVLAQRLVRTLCPHCKQP 493

Query: 404 YEADKEQRKLFDSKKKEPLI-----LYRATGCPKCNHKGYRGRTGIHELLLVDDALQELI 458
              D   R+  ++  K   I      Y+  GC  C   GY GR G++ELL + ++ +  +
Sbjct: 494 --DDTVTRESLETIVKPWQITGSVRAYKPVGCVDCRMTGYMGRMGLYELLSISESFKTQV 551

Query: 459 HSEAGEQAMEKH--IRATTPSIRDDGLDKVRQGITSLEEVMRVT 500
             E     + +   I    P +R  G  +V +G+T++EEV+  T
Sbjct: 552 TKEPNLAGLRRQAVIDGMRP-LRLAGALRVAEGVTTIEEVLSAT 594