Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 577 a.a., Type IV fimbrial assembly, ATPase PilB from Variovorax sp. SCN45

 Score =  357 bits (915), Expect = e-103
 Identities = 198/455 (43%), Positives = 290/455 (63%), Gaps = 14/455 (3%)

Query: 58  VKHAFQL-IELSQAEFESKLTQVYQRDSSEARQLMEDIGADSDDFFSLAEELP--QNEDL 114
           +K A Q+ ++   AE++ KL+++ +  +  A + +  I     +F  +  +     NE  
Sbjct: 127 IKFASQMGVDWVIAEYD-KLSRMIEAAAVSAAETINSIVGSEFEFDEVTADTSGDANEQA 185

Query: 115 LESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREVLAPSRKLSSL 174
           +   +DAP+++ ++ ML +A+   ASDIH E +E    +RFRVDG LRE+ +P   +   
Sbjct: 186 IAEVEDAPVVRFLHKMLLDAVGMRASDIHFEPYEHNYRVRFRVDGELREIASPPTVIKDK 245

Query: 175 LVSRVKVMAKLDIAEKRVPQDGRISLRIG-GRAVDVRVSTMPSSHGERVVMRLLDKNATR 233
           L SR+KV+++LDI+EKRVPQDGR+ L+IG  R +D RVST+P+  GE++V+R+LD ++ R
Sbjct: 246 LASRIKVISRLDISEKRVPQDGRMKLKIGPDRVIDFRVSTLPTLFGEKIVVRILDPSSAR 305

Query: 234 LDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 293
           L + +LG  A         I RP+G++LVTGPTGSGK+ +LY  L  LN    NI T ED
Sbjct: 306 LGIDALGYDADEKARLLHAIGRPYGMVLVTGPTGSGKTVSLYTCLNLLNQPGVNIATAED 365

Query: 294 PIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHL 353
           P E ++ G+ Q  VN R  +TFA  LRA LRQDPD++MVGEIRDLETA I+++A+ TGHL
Sbjct: 366 PSEINLPGVNQVNVNERAGLTFAAALRAFLRQDPDIIMVGEIRDLETADISIKAAQTGHL 425

Query: 354 VMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKL 413
           V+STLHTN A   +TR+R+MGI PF I+SS++ + AQRL R LC  C+ P  AD  +  L
Sbjct: 426 VLSTLHTNDAPTTLTRMRNMGIAPFNIASSVILITAQRLARRLCTVCRAP--ADVPREAL 483

Query: 414 FDSKKKEPLI-----LYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGE-QAM 467
            D+  +E  +      YR  GC  C+  GY+GR GI++++ + +A+QE+I  +       
Sbjct: 484 LDAGFQEEQLDGSWKPYRPVGCSACS-GGYKGRVGIYQVMPISEAIQEIILRDGSALDIA 542

Query: 468 EKHIRATTPSIRDDGLDKVRQGITSLEEVMRVTKE 502
           ++  R    S+R  GL KV QG+TSLEEV+  T E
Sbjct: 543 QQSEREGVRSLRQSGLRKVMQGLTSLEEVVACTNE 577