Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 598 a.a., putative Type II secretion system protein from Pseudomonas putida KT2440

 Score =  318 bits (814), Expect = 4e-91
 Identities = 179/399 (44%), Positives = 248/399 (62%), Gaps = 21/399 (5%)

Query: 117 SEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREV-LAPSRKLSSLL 175
           SED + ++KL+N+ L +A+K  ASDIH+    + L+I++R+DGVL     A     +  +
Sbjct: 204 SEDQSRVVKLVNSTLYDALKLHASDIHLGMTGQGLTIKYRIDGVLNGAGKASGSAFADQV 263

Query: 176 VSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVMRLLDKN----- 230
           +SR+KVMA+LDI EKRVPQDGR  + +G R +D RVS MPS  GE  V+R+LDK      
Sbjct: 264 ISRIKVMAELDIGEKRVPQDGRFKVAVGDRQIDFRVSIMPSIFGEDAVLRVLDKQDLSDR 323

Query: 231 ATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILT 290
            + + L +LG         RRL   P+G+ILVTGPTGSGK+TTLYA + E+N     I+T
Sbjct: 324 VSGVQLQALGFADETLRALRRLAAEPYGMILVTGPTGSGKTTTLYAMISEINHGVDKIIT 383

Query: 291 VEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLT 350
           +EDP+E+ + G+ Q  VN +  +TFARGLR+ILR DPD ++VGEIRD +TAQIAVQ++LT
Sbjct: 384 IEDPVEYQLPGVLQIPVNEKKGLTFARGLRSILRHDPDKILVGEIRDPDTAQIAVQSALT 443

Query: 351 GHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQ 410
           GHLV +T+H N     + R   M ++P+   S+L  VLAQRL+R  CP C  P E D + 
Sbjct: 444 GHLVFTTIHANNVFDVIGRFSQMQVDPYSFVSALNAVLAQRLIRLACPHCATPCEHDDD- 502

Query: 411 RKLFDSKKKEPLI----LYRATGCPKCNHKGYRGRTGIHELLLVDDALQELI-----HSE 461
             L+ S      +      R  GC  C   GYRGR+ I ELL +DD L+++I      ++
Sbjct: 503 -TLYGSGLTREGVAGWTFVRVKGCGHCRGSGYRGRSAIAELLHLDDDLRQMIVERRPLAQ 561

Query: 462 AGEQAMEKHIRATTPSIRDDGLDKVRQGITSLEEVMRVT 500
               A ++ +R     +R   LD VR G T+LEE+ RVT
Sbjct: 562 IKTLACQRGLRL----LRASALDLVRDGRTTLEEINRVT 596