Pairwise Alignments

Query, 503 a.a., type II secretion system protein GspE from Vibrio cholerae E7946 ATCC 55056

Subject, 461 a.a., conserved protein with nucleoside triphosphate hydrolase domain (NCBI) from Escherichia coli BW25113

 Score =  320 bits (821), Expect = 5e-92
 Identities = 171/396 (43%), Positives = 256/396 (64%), Gaps = 5/396 (1%)

Query: 105 AEELPQNEDLLESEDDAPIIKLINAMLGEAIKEGASDIHIETFEKTLSIRFRVDGVLREV 164
           A    Q   +   E   P  +L+   L  A+++ ASDIHIE  +    IR R+DGVL  +
Sbjct: 63  ASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRASDIHIEPADNAYRIRLRIDGVLHPL 122

Query: 165 LAPSRKLSSLLVSRVKVMAKLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGERVVM 224
              S      L +R+KV+  LDIAE R+PQDG+ ++ + G AV  R++T+P   GE+VV+
Sbjct: 123 PDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFTVELAGNAVSFRIATLPCRGGEKVVL 182

Query: 225 RLLDKNATRLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSS 284
           RLL +    LD+++LGM      +F   +++P G++LVTGPTGSGK+ TLY+ LQ+LN++
Sbjct: 183 RLLQQVGQALDVNTLGMQPLQLADFAHALQQPQGLVLVTGPTGSGKTVTLYSALQKLNTA 242

Query: 285 ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIA 344
           + NI +VEDP+E  I G+ QTQ++PR  +TF   LRA+LRQDPDV+M+GEIRD ETA+IA
Sbjct: 243 DINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGVLRALLRQDPDVIMIGEIRDGETAEIA 302

Query: 345 VQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPY 404
           ++A+ TGHLV+STLHTN+    + RL+ MG+  +++SS+L  V+AQRLVR LCP C+   
Sbjct: 303 IKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCR--- 359

Query: 405 EADKEQRKLFDSKKKEPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGE 464
               E   + D+    PL  ++A GC  C H G+ GRT + E+L +   +++LI +    
Sbjct: 360 RQQGEPIHIPDNVWPSPLPHWQAPGCVHCYH-GFYGRTALFEVLPITPVIRQLISANTDV 418

Query: 465 QAMEKHIR-ATTPSIRDDGLDKVRQGITSLEEVMRV 499
           +++E H R A   ++ ++G   V QG+T+ EE++RV
Sbjct: 419 ESLETHARQAGMRTLFENGCLAVEQGLTTFEELIRV 454