Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system inner membrane protein GspF from Rhodanobacter sp000427505 FW510-R12

 Score =  216 bits (550), Expect = 1e-60
 Identities = 141/407 (34%), Positives = 217/407 (53%), Gaps = 10/407 (2%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFA-- 58
           M+ + YKA++  G   +G +E  +  +V  RL++Q   P+E    Q         G A  
Sbjct: 1   MSQYRYKAVNESGEVLQGRMEAASVEEVIGRLQDQGHTPLEA---QPADGAGGGSGLAAL 57

Query: 59  FKRG-ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYT 117
           F+RG  S   LA  T QLATL+ +G PL+  L  + E  E    + ++  VR +V  G +
Sbjct: 58  FRRGPFSGDQLAQFTHQLATLLGAGQPLDRALGILLELPEGESAKKLVERVRDRVRGGNS 117

Query: 118 LSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVL 177
           LS +L +   VF +L+ S+V AGE  G L+  L RLADY E  Q++R  +  A+IYP  L
Sbjct: 118 LSSALDEEHGVFPKLYVSLVRAGEAGGSLEETLRRLADYLERAQQLRGSIVNALIYPAFL 177

Query: 178 VVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWG--ISLLVGLLML 235
           +V  +G +  LLA VVP+ V  F  M   +P  T  +L   + LQ W   I LL+G  + 
Sbjct: 178 LVGVLGSLVLLLAYVVPQFVPIFEDMQVPVPWITAAVLALGNALQAWWWLIVLLLGGGLA 237

Query: 236 IYLVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVA 295
            +  R  L +P  RL W  R++ L V+G +   + TAR ARTL     + +P+L  + +A
Sbjct: 238 AWRAR--LREPAARLAWHARLLRLRVVGPLLLKVETARIARTLGTLLKNGVPLLSALTIA 295

Query: 296 VDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRA 355
             V  N+ +   + AA E V+ G+ L  AL Q+KLFP + + M+  GE++G+L+ ML + 
Sbjct: 296 RQVTGNRALDAALDAAHEQVKGGAGLSLALGQSKLFPRLAMQMVQVGEEAGQLDTMLLKV 355

Query: 356 ADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNN 402
           AD  +      ++  L    PAL  +M  +V  I+ A L+P+L + +
Sbjct: 356 ADTFELESRRAIDRLLAALVPALTIVMTVLVAIIMAAILLPLLSLTS 402