Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., Putative type II secretion system protein F from Xanthobacter sp. DMC5

 Score =  177 bits (450), Expect = 4e-49
 Identities = 114/401 (28%), Positives = 204/401 (50%), Gaps = 3/401 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           MA F Y+AL   G+   G I      +VR+R++   LVP+E   T +K  +  + GF+F 
Sbjct: 1   MATFSYRALTQAGQIVSGEIAAPTEAEVRRRIEFLGLVPVET--TPLKEKKDNAFGFSFG 58

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
                 D+ L TR LA L+++G  L+E L  +   ++  R+R +   +RA V  G +L++
Sbjct: 59  AP-KAEDVTLFTRDLALLLRAGARLDEALELLTGDTDLGRMRAVARKIRADVLAGESLAE 117

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L  +P +F  ++ ++V  GE SG +D +LE +A   +  +++R K+  A+ YP  ++V 
Sbjct: 118 ALASHPALFPPVYVALVRVGEASGTVDRMLELVAAERQRAEELRRKVVSALQYPAFVLVA 177

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
           A G++ F L  V+P+       MG  L    Q LLD SD LQ    ++ +  ++L  L  
Sbjct: 178 AGGVLVFFLMFVMPQFSSVLRDMGAKLDPMVQVLLDLSDGLQAHAAAVGIAAVVLPALAF 237

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
             L + ++R      +  LP++  +     +A F R LSI   + + +   +R+ VDVM 
Sbjct: 238 LALRRQEVRGVVTGALSKLPLVRTVLLFRRSAVFCRNLSILLGNGVTLTAALRIIVDVMA 297

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
                     AA+ VR G  L  A  +  + PPM + M+  GE++G+L  +  R AD  +
Sbjct: 298 AGEEASVWAKAADRVRHGGRLSDAFAEGDVLPPMAIRMLRLGEETGQLALLSGRIADFYE 357

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMN 401
              +  +   + +  PA I  ++ +V  ++++ +  +L ++
Sbjct: 358 EKLQRALARVVAVIGPAAIVTISVVVGGLIVSVMTALLSVS 398