Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., type II secretion system protein F from Pseudomonas simiae WCS417

 Score =  189 bits (479), Expect = 2e-52
 Identities = 117/404 (28%), Positives = 219/404 (54%), Gaps = 16/404 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFA-FKRG 62
           + ++ ++ KGR   G   G N   V+ +L++Q + P  V        R +S   +     
Sbjct: 8   YAWEGINRKGRRVSGQTTGHNPALVKAQLRKQGICPGHV--------RKKSPVLSSLAAS 59

Query: 63  ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSL 122
           I++ D+ L TRQLATL+++G+PL +    +AE  +   +R  +  ++  +  G +L+++L
Sbjct: 60  ITSTDITLFTRQLATLLKAGIPLLQAFDIIAEGFDNRALRERVQGLKQAIEAGTSLAEAL 119

Query: 123 GDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAV 182
              P  FDEL+ ++VAAGE++G L+++LER+A + E  +++++++++AM YP+ ++V A 
Sbjct: 120 RKQPRCFDELYCNLVAAGEQAGALETLLERVAIHREKSEQLKTRIKKAMTYPITVLVVAS 179

Query: 183 GIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQH--WGISL--LVGLLMLIYL 238
            +   LL  VVP+    F  +   LP  T  ++  S+F+Q   W ++L  L G L L   
Sbjct: 180 LVTGVLLVHVVPQFQNLFAGVDGKLPGFTLQVIGLSEFMQKAWWAVALGGLAGGLGLREA 239

Query: 239 VRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDV 298
            R L    D RL  D  ++  PV GK+      ARFARTLS   ++ +P+L  +      
Sbjct: 240 YRRL---ADFRLWLDSCLLKAPVAGKLLSKSAVARFARTLSTTFAAGVPLLQALDSVAGA 296

Query: 299 MTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADN 358
             +   ++ +     +V  G  L +++  + LFP M + M A GE+SG L+ ML + A++
Sbjct: 297 AGSGPFRRAIEQMRRDVATGMPLNQSMLTSGLFPGMAIQMTAIGEESGTLDRMLEKVANH 356

Query: 359 QDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNN 402
            +   ++ V+    +  P ++ ++ G+V  +V+A  +P+ ++ +
Sbjct: 357 YEADVDNLVDHLTHLMEPLIMVVLGGIVGALVIAMYLPVFQLGS 400