Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., general secretion pathway protein GspF from Pseudomonas simiae WCS417

 Score =  212 bits (540), Expect = 1e-59
 Identities = 130/405 (32%), Positives = 224/405 (55%), Gaps = 12/405 (2%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQ---VKAARSRSQGF 57
           M+ F+++ALD++G  + G +E  +       L ++ L+ +++       ++  R + +G 
Sbjct: 1   MSLFKFRALDSQGVPQNGTLEAVDQVAAVAALHKRGLLLLQIEAAGSPLLRNPRGQLKGA 60

Query: 58  AFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYT 117
           A         L   T+QLATL+ +G PLE  L  + +Q  +P++R ++  +R  V  G  
Sbjct: 61  A---------LVSFTQQLATLLGAGQPLERSLSLLLKQPGQPQVRALIGRIRDHVKAGKP 111

Query: 118 LSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVL 177
           LS +L +    F  L+ SMV AGE  G L++ L +L+DY E  +++R ++  A+IYP  L
Sbjct: 112 LSAALEEEGGSFSPLYLSMVRAGEAGGALENTLRQLSDYLERSERLRGEVINALIYPAFL 171

Query: 178 VVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIY 237
           VV  +G +A LLA VVP+ V  F  +G  +P  T+ +L   +FL  +G+ +L GL++   
Sbjct: 172 VVGVLGSLALLLAYVVPQFVPIFQDLGVPIPWITEVILALGEFLGAYGLLVLAGLIVSGG 231

Query: 238 LVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVD 297
                L  P  R ++DRR++ +  IG + + +  AR  RTL    S+ + +L  + +A  
Sbjct: 232 CWAARLRNPAFREQYDRRLLGVRGIGPLLQRVEAARLTRTLGTLLSNGVALLQALVIARQ 291

Query: 298 VMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAAD 357
           V TN+ ++ QV +AAE+V+ G +L  A     L P + L MI  GEQ+GEL+ ML + AD
Sbjct: 292 VCTNRALQAQVGSAAESVKGGGTLASAFGSQPLLPELALQMIEVGEQAGELDSMLLKVAD 351

Query: 358 NQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNN 402
             D   +  ++  L    P+L  +MA +V  I++A ++P++ + +
Sbjct: 352 IFDVEAKRGIDRLLAALVPSLTVVMAVLVAVIMLAIMLPLMSLTS 396