Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., general secretion pathway protein GspF from Pseudomonas simiae WCS417

 Score =  287 bits (734), Expect = 4e-82
 Identities = 167/406 (41%), Positives = 236/406 (58%), Gaps = 4/406 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEV-VETQVKAARSRSQGFAF 59
           M  + Y+A DA G  + G +E D+       L+ + L  + V +E   +AA   S    F
Sbjct: 1   MNRYRYEAADANGNVEAGHVEADSQSAAFANLRSRGLTALLVQIEGNQQAAAGSS---LF 57

Query: 60  KRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLS 119
              +S  DLA  TRQLA+L+ + +PLE  L A  EQ+EK  I   L AVRA V  G  L+
Sbjct: 58  TAKLSDNDLAWATRQLASLLGASLPLEAALSATVEQAEKKHIAQTLSAVRADVRGGMRLA 117

Query: 120 DSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVV 179
           D+L   P  F  ++R+++AAGE+SG L  V+ERLADY E R  +R K+  A IYP V+ +
Sbjct: 118 DALAARPRDFPSIYRALIAAGEESGDLAQVMERLADYIEERNNLRGKILTAFIYPGVVGL 177

Query: 180 FAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLV 239
            ++GIV FLL+ VVP++V  F Q  Q LP  T  +L+ASDF++ WG     G++   +  
Sbjct: 178 VSIGIVIFLLSYVVPQVVSAFSQARQDLPGLTLAMLNASDFVRAWGGLCFAGMVGGFWSW 237

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           R  L  P  RL W  RV+ LP+IG+   GLNTARFA TL+I   + +P+L  +  A   +
Sbjct: 238 RLYLRNPVARLSWHSRVLRLPLIGRFVLGLNTARFASTLAILGGAGVPLLRALEAARQTL 297

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
           +N  + Q V  A   VREG +L  AL   K+FPP+++H+IASGE++G L  ML RAA   
Sbjct: 298 SNDRLSQCVNDATAKVREGVNLAPALAVEKVFPPVLIHLIASGEKTGALPPMLERAAQTL 357

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
               E        +  P +I +M  +VL IVMA L+PI+E+N L++
Sbjct: 358 SRDIERRAMGMTALLEPLMIVVMGAVVLVIVMAVLLPIIEINQLVT 403