Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 151 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

 Score = 80.9 bits (198), Expect = 2e-20
 Identities = 39/147 (26%), Positives = 80/147 (54%)

Query: 254 RRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQFVKQQVLAAAE 313
           R ++ +PV+G+I      ARFARTL++   + +P+++ +        N   ++ V    +
Sbjct: 1   RAMLKIPVVGQILHNAAVARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRD 60

Query: 314 NVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNSFESTVNIALGI 373
           +V  G  +  A++Q  LFP M++ M A GE++G L+ ML + A+  +    + V+    +
Sbjct: 61  DVSVGYQVNMAMKQVNLFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSL 120

Query: 374 FTPALIALMAGMVLFIVMATLMPILEM 400
             P ++ ++  +V  +V+A  +PI ++
Sbjct: 121 LEPLIMIILGVIVGGMVVAMYLPIFKL 147



 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 30/127 (23%), Positives = 65/127 (51%), Gaps = 1/127 (0%)

Query: 68  LALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPH 127
           +A   R LA   ++G+PL E L  VA  +        +  +R  V+ GY ++ ++    +
Sbjct: 18  VARFARTLAVTFRAGVPLVEALDTVAGATGNVVYEKAVYRIRDDVSVGYQVNMAMKQV-N 76

Query: 128 VFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAF 187
           +F  +   M A GE++G LD++L ++A++ E           +++ P+++++  V +   
Sbjct: 77  LFPHMVIQMTAIGEEAGALDTMLVKVAEFYEQEVNNAVDALSSLLEPLIMIILGVIVGGM 136

Query: 188 LLAAVVP 194
           ++A  +P
Sbjct: 137 VVAMYLP 143