Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 409 a.a., Type IV fimbrial assembly protein PilC from Variovorax sp. SCN45

 Score =  183 bits (465), Expect = 7e-51
 Identities = 115/403 (28%), Positives = 207/403 (51%), Gaps = 13/403 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           FE++  D  G+  +G +      QV+  L+ Q      V+ +++K  R RS      + I
Sbjct: 18  FEWEGKDRNGKLVRGELRAAGENQVQAALRRQG-----VLASKIKKRRMRSG-----KKI 67

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
              D+A+ TRQLAT++++G+PL +    V   +    +  +L  +R+ V  G +LS +  
Sbjct: 68  KPKDIAIFTRQLATMMKAGVPLMQSFDIVGRGNANASVAKLLNDIRSDVETGTSLSMAFR 127

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
            +P  FD L+ ++V AGE +G L+ +L+RLA Y E  + ++SK++ A++YP  ++V A  
Sbjct: 128 KFPKYFDNLYCNLVEAGEAAGILEELLDRLATYMEKTEAIKSKIKSALMYPTSVIVVAFV 187

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIY--LVRW 241
           +VA ++  V+P     F   G  LPA T F++  S+F   +   +  GL   IY  L  W
Sbjct: 188 VVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAISEFFVSYWWLIFGGLGGGIYFFLQAW 247

Query: 242 LLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTN 301
              +   R+  DR ++ +P+ G +      AR+ RTL+   ++ IP+++ +        N
Sbjct: 248 KRNERVQRV-MDRALLRVPIFGVLIEKSCVARWTRTLATMFAAGIPLVEALDSVGGASGN 306

Query: 302 QFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDN 361
                      + V  G+SL  A+    LFP M++ M A GE+SG ++ ML +AAD  ++
Sbjct: 307 TVYGDATAKIQQEVSTGTSLTAAMTNVNLFPSMVIQMTAIGEESGSIDHMLGKAADFYES 366

Query: 362 SFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
             +  V     +  P +I  +  ++  IV++  +PI ++  ++
Sbjct: 367 EVDDMVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIFKLGQVV 409