Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., General secretion pathway protein F from Variovorax sp. SCN45

 Score =  282 bits (721), Expect = 1e-80
 Identities = 157/405 (38%), Positives = 246/405 (60%), Gaps = 6/405 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           MA FEY+A  A G  ++G  EG++AR VR +L+++ L P+++ E   KAA   +  +   
Sbjct: 1   MARFEYEAASASGELQRGTTEGESARSVRAQLRDRGLTPLDIRE---KAAGGGALSWLSP 57

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           R +   DL   TR+LA+L+ + + LE  L A  EQ+E+  +   L AV   V  G  L+D
Sbjct: 58  R-LGAADLCWATRELASLLGARLTLEAALVATIEQAERKHVAESLSAVCDSVRAGMRLAD 116

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +LG+ P  F +++R++V+AGE SG L  V+ERLADY ENR  +R K+  A IYP ++   
Sbjct: 117 ALGERPRDFPQIYRALVSAGEDSGDLARVMERLADYLENRDNLRGKVLTAFIYPAIVGFV 176

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL-V 239
           ++ IV FLL  VVP+++G F Q  Q LP  T+ +L AS F++ WG  L  G+++  ++  
Sbjct: 177 SLCIVVFLLGYVVPQVIGAFAQARQELPTITRVMLAASAFVREWG-WLTAGVVVAAWVAA 235

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           R LL     +L+W   ++ +P++G+ A G++TARFA TLSI   + +P+L  +  A   +
Sbjct: 236 RALLRDAAHKLKWHGLILRMPMVGRFALGVDTARFASTLSILMDAGVPLLRALEAARQTL 295

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N+++K+ VL A   V+EG+ L  AL+  K+FP  ++H++ASGE++G L  M  RAA N 
Sbjct: 296 VNEWLKRCVLEATGRVKEGTPLAAALKAQKIFPSNLVHLVASGEKTGALAAMFERAALNL 355

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
               E        +  P +I  M G+V+ IV+A LMPI+E+N ++
Sbjct: 356 SRDLERRAMRLTTLLEPLMILAMGGVVMAIVLAVLMPIMEINQMV 400