Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., type II secretion system inner membrane protein GspF from Variovorax sp. OAS795

 Score =  254 bits (648), Expect = 4e-72
 Identities = 145/410 (35%), Positives = 235/410 (57%), Gaps = 6/410 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M A+ ++A+DA G+ ++GV+E D AR  R  L+ Q+L+P+ V             G   +
Sbjct: 1   MPAYSFEAIDASGQSREGVLEADTARSARSLLRAQALIPLSVTPVGSNHVNGTGSGGLRR 60

Query: 61  ------RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTE 114
                 R  S+  LA+ TRQLA LV SG+PLE  L A+ +++E    R ++ ++RA+V  
Sbjct: 61  WLGGGARIFSSTGLAVWTRQLAGLVSSGLPLERALTALTDEAETEPQRNLVASLRAEVNA 120

Query: 115 GYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYP 174
           G   + +L  +P  F  ++ +++ AGE+SG+L  VL+RLAD  E RQ ++ KL  A +YP
Sbjct: 121 GSPFARALAAHPREFSPIYTAVIGAGEQSGNLGLVLDRLADDLEERQALQQKLIGAALYP 180

Query: 175 VVLVVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLM 234
            ++ + A+ IV FL++ VVP++   F    ++LP  T  +L  S  ++ +G  +L GL+ 
Sbjct: 181 AIVTLVAIVIVIFLVSYVVPQVAQVFAGTKRSLPFLTTAMLSLSAAVRSYGWWMLGGLVA 240

Query: 235 LIYLVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRV 294
           +   VR  L +   RL++D   + LP++GK+ARG N ARFA TL++  ++ +PIL  ++ 
Sbjct: 241 VAVGVRLALAQEAFRLKFDAAWLKLPLVGKLARGYNAARFASTLAMLATAGVPILRALQA 300

Query: 295 AVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTR 354
           A + + N+ ++   L A   VREG+ L  AL Q K FP ++      GEQ+G L  ML R
Sbjct: 301 ASETLGNRAMRADALDALVLVREGAPLASALAQKKRFPGLVSMFARLGEQTGTLPLMLQR 360

Query: 355 AADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           AA+      +        I  P LI  M G+V+ IV+A ++PI+++N  +
Sbjct: 361 AANQLGAEVQRRAMHLATILEPLLIVAMGGVVMLIVLAVMLPIIQLNQFV 410