Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  187 bits (474), Expect = 6e-52
 Identities = 114/405 (28%), Positives = 211/405 (52%), Gaps = 14/405 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK--R 61
           + +K +++ G+   G +   +  +VR +LK+Q +        Q+K  +  S     +   
Sbjct: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHI--------QIKKLKKGSVSLLARLTH 63

Query: 62  GISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDS 121
            + + D+ ++TRQLAT++ +G+P+ + L+ V +   K  ++++L  +   V  G  LS +
Sbjct: 64  RVKSKDITILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKA 123

Query: 122 LGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181
           +      FD L+  +V  GE SG+L  V ERLA Y E  +++R+K+ +A+IYP ++V+ A
Sbjct: 124 MRTASAHFDTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVA 183

Query: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRW 241
           +G+   +L  V+P+    F   G  LP  TQ +L  S ++Q + +   + +   I+ ++ 
Sbjct: 184 LGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKA 243

Query: 242 LLTKP-DIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
           L      IRL+  R  +  P+IG +    + A+F+RTL+   ++ IPIL  ++       
Sbjct: 244 LRKNSFQIRLKTSRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSG 303

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N   +  +     +   G  +  A+  T+ FP M+L M+  GE+SG+L+ ML + A   +
Sbjct: 304 NVHFETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYE 363

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
              ++TV+    I  P +I  +  +V  +V+A  +PI    NLMS
Sbjct: 364 FEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIF---NLMS 405