Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 340 a.a., toxin coregulated pilus biosynthesis protein E from Vibrio cholerae E7946 ATCC 55056

 Score = 48.5 bits (114), Expect = 3e-10
 Identities = 63/317 (19%), Positives = 136/317 (42%), Gaps = 14/317 (4%)

Query: 75  LATLVQSGMPLEECLRAVAEQS----EKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFD 130
           L  L+   +PL + L  +  +     +K  I+++ + ++ ++    +L+D+L       +
Sbjct: 16  LVDLLNDNIPLYDALNKIQNEGVGIYDKNFIKSIEL-IKDRMKSNSSLTDALTGLIPDKE 74

Query: 131 ELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAFLLA 190
            L   M+   E SG + S +  +     +  +++SK   +MI P V+++  + ++A    
Sbjct: 75  VL---MINVAENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVVIAGYSV 131

Query: 191 AVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWLLTKPDIRL 250
            V P    + V      P  TQ L +   F  + G+ + V + + I++   +    +I  
Sbjct: 132 KVFPTF--ESVLPVSRWPGVTQALYNLG-FSLYEGLWIKVLIFVAIFITILVFMSKNITG 188

Query: 251 RW-DRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQFVKQQVL 309
            + D  +  LP    + + +    F   +S+   S +P  +G+ + VD  T +++   + 
Sbjct: 189 NFRDGFLDKLPPFNFV-KHIAATEFLANMSMLLDSRVPFKEGLDI-VDHKTTRWLSSHLQ 246

Query: 310 AAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNSFESTVNI 369
               N++EG   ++AL+   L   M+L M    E     + M   A +   N  +    +
Sbjct: 247 RMKANMQEGLDYKQALDTNLLDKKMLLTMAVYSELPNFSDVMQKLAIEANINLHKKIATL 306

Query: 370 ALGIFTPALIALMAGMV 386
           A  +   +LI L   ++
Sbjct: 307 AGVMKNISLITLALSVI 323



 Score = 28.5 bits (62), Expect = 3e-04
 Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 286 IPILDGMRV----AVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIAS 341
           IP+ D +       V +    F+K   L   + ++  SSL  AL  T L P   + MI  
Sbjct: 24  IPLYDALNKIQNEGVGIYDKNFIKSIELIK-DRMKSNSSLTDAL--TGLIPDKEVLMINV 80

Query: 342 GEQSGELEGMLTRAADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILE 399
            E SG++   +     N  ++ E        + TP+++ ++  +V+      + P  E
Sbjct: 81  AENSGKISSGIAAIRKNIIDADEIKSKAISSMITPSVMLIVTMVVIAGYSVKVFPTFE 138