Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., type II secretion system protein from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  210 bits (534), Expect = 7e-59
 Identities = 113/403 (28%), Positives = 225/403 (55%), Gaps = 10/403 (2%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           + ++ +D KG    G + G N   V+ +L++Q + P +V +  V         F   + I
Sbjct: 11  YTWEGVDKKGTKTSGELSGHNLALVKAQLRKQGINPTKVRKKSVSI-------FGKGKKI 63

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
              D+A  +RQ+AT++++G+PL +    ++E +E P +R ++ +++ +V+ G + + +L 
Sbjct: 64  KPLDIAFFSRQMATMMKAGVPLLQSFDIISEGAENPNMRALVGSLKQEVSAGNSFATALR 123

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
             P  FD+LF ++V AGE++G L+S+L+R+A Y E  +K+++K+++AM YP+ +++ A+ 
Sbjct: 124 QKPEYFDDLFCNLVDAGEQAGALESLLDRVASYKEKTEKLKAKIKKAMTYPIAVLIVALI 183

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWLL 243
           +   LL  VVP+    F   G  LP  T  ++  SD +Q W ++ +VGL  + + +    
Sbjct: 184 VSGILLIKVVPQFQSVFASFGAQLPTFTLMVIGLSDVVQKWWLA-IVGLFFVSFFIFKRA 242

Query: 244 TKPDIRLR--WDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTN 301
            K   + R   DR ++ +P+IG +    + AR+ARTL+   ++ +P+++ +        N
Sbjct: 243 YKQSQKFRDSLDRLLLKVPIIGPLIFKSSVARYARTLATTFAAGVPLVEALDSVAGATGN 302

Query: 302 QFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDN 361
              K  V+   ++V  G  L  ++  T +FP + + M A GE+SG L+ ML + A   ++
Sbjct: 303 VVFKNAVIKVKQDVSTGMQLNFSMRSTGVFPSLAIQMTAIGEESGALDTMLDKVATYYED 362

Query: 362 SFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
             ++ V+    +  P ++A +  +V  +V+A  +PI ++ N++
Sbjct: 363 EVDNMVDNLTSLMEPMIMAFLGVIVGGLVIAMYLPIFQLGNVV 405