Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., General secretion pathway protein F from Sphingobium sp. HT1-2

 Score =  275 bits (702), Expect = 2e-78
 Identities = 154/406 (37%), Positives = 248/406 (61%), Gaps = 7/406 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           MA F+Y A+D  G+ +KG ++ D+  + R +L  + L  + +    V  AR R+      
Sbjct: 1   MADFDYVAIDPAGKERKGSVKADSLDEARVKLDARKLFVVRLEPGAVSVARKRAGLSLRA 60

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
             +S  +L L TRQL+TL+Q   PLEE LR ++ QSE+  +R ++  V + V EG  L+D
Sbjct: 61  PKLSAKELTLFTRQLSTLIQVS-PLEESLRTISRQSEQDHVRVIVGKVHSGVLEGRRLAD 119

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +LG  P  F  L+R+M++AGE SG L +++ERL++  E +  MRSK+  A+ YP VL  F
Sbjct: 120 ALGAEPKSFPALYRAMISAGESSGSLPTIMERLSELMERQAVMRSKVLTAIAYPSVLATF 179

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQH--WGISLLVGLLMLIYL 238
           AV +VA L+  VVPK+V QF  +GQ LP  T+ ++  S FL    W + +L+GL    + 
Sbjct: 180 AVFVVAALMIFVVPKVVEQFDTVGQQLPLLTRLVMGISAFLAGYWWLLLILIGLGAFGF- 238

Query: 239 VRWLLTKPD-IRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVD 297
             W   K D  R R+D  ++ LPV+G++ R L+ AR ARTLS   +S +P+++G+ +  +
Sbjct: 239 --WRALKIDSFRYRFDAMLLGLPVLGRLIRDLHAARMARTLSTMVASRLPLMEGLSLTAN 296

Query: 298 VMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAAD 357
            + N+ +++      E +R G SL  AL++  +FPP+++++ ASGE +G L+ ML RAAD
Sbjct: 297 TVHNRVLRKASDEIVEAIRGGGSLSAALKRAGVFPPLLVYLAASGESAGRLDTMLERAAD 356

Query: 358 NQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNL 403
             +  F++  + AL +  P +I LM G+V  I+++ L+PIL++ +L
Sbjct: 357 YLEREFDAFTSAALAMLEPIIIILMGGIVAVIILSILLPILQLQSL 402