Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., Type II secretion pathway protein XcpS from Pseudomonas putida KT2440

 Score =  172 bits (436), Expect = 2e-47
 Identities = 128/404 (31%), Positives = 210/404 (51%), Gaps = 16/404 (3%)

Query: 2   AAFEYKALDAKGRHKKGV----IEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGF 57
           AA  Y +L A GR  +GV    I+ ++A Q R++ ++Q L  + +     +++    +G 
Sbjct: 6   AAMRY-SLKALGR--QGVVQLQIDAEDADQARRQAEDQGLRVLSL-----RSSGGALRGM 57

Query: 58  AFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYT 117
           A++R  +  DL L +++L+TL+ +G+PL + L ++AE+S     R +L  +  ++ EG +
Sbjct: 58  AWRREAAF-DLVLFSQELSTLLNAGLPLIDALESLAEKSPAATARKVLAELVRQLYEGRS 116

Query: 118 LSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVL 177
           LS +LG  P VF  L+ ++V + E++G L   L R   Y +    +R KL  A +YP++L
Sbjct: 117 LSQALGQQPRVFPPLYVALVQSSERTGALGDALTRYISYRQRLDLVRQKLVGASVYPLLL 176

Query: 178 VVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIY 237
           ++   G+V FLL  VVP+    F  MG  LP  ++ L+    FL      L +G +  + 
Sbjct: 177 LLVGGGVVLFLLGYVVPRFSQVFEGMGTELPWLSRVLMQVGLFLHAQQAPLALGTVGGVA 236

Query: 238 LVRWLLTK-PDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAV 296
            + WLL + P +R     ++  LP + +       ARF R+L I     IPIL  M +A 
Sbjct: 237 AL-WLLRRHPRVRYWASCQLRRLPALHQRLMMYELARFYRSLGILLQGGIPILTAMGMAR 295

Query: 297 DVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAA 356
            ++ N    Q +  A++ V EG  L  AL    L  P+ L ++ +GEQSG L  ML R A
Sbjct: 296 GLLGNA-AAQGLEQASQRVGEGLPLSDALAAGHLVTPVSLRLLRAGEQSGNLGEMLERCA 354

Query: 357 DNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM 400
           D  D      V   + +F P L+  +  ++  IV+   MPI E+
Sbjct: 355 DFHDQEIGRWVEWFVKLFEPLLMTFIGLLIGLIVILMYMPIFEL 398