Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., putative protein secretion protein for export from Pseudomonas putida KT2440

 Score =  271 bits (692), Expect = 3e-77
 Identities = 151/401 (37%), Positives = 239/401 (59%), Gaps = 6/401 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M  + Y+A+D  G+  K  ++ D+ R  RQ L+EQ L   ++      + + R Q     
Sbjct: 1   MPTYRYQAVDLAGKSHKASLQADSERHARQLLREQGLFARQLQRHDAGSRQPRRQR---- 56

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
             +S   L  +TRQLATL  +G+PL + L  +  Q  +P + ++LVA+R  + EG  L+ 
Sbjct: 57  --LSRAQLCELTRQLATLTGAGIPLVDALATLERQLRQPALHSVLVALRGSLAEGLGLAR 114

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           SL      F  L+ ++V AGE+SGHL  VL RLAD+ E  Q+ + K + A+IYP VL+  
Sbjct: 115 SLARQGAPFTGLYCALVEAGERSGHLAQVLTRLADHLEQVQRQQHKARTALIYPAVLMGV 174

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
           ++ +V  L+  VVPK+  QF   GQ+LP  T  L+  S  L H G  LL   L+L  L  
Sbjct: 175 SLAVVIGLMTFVVPKLTEQFAHAGQSLPLITSLLIGLSQGLVHAGPWLLGVALLLGGLAG 234

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
           WLL KP   LR D+ ++ LP IG + + L +AR AR+L+I   S + +L+ ++VA + + 
Sbjct: 235 WLLRKPHWCLRRDQLLLRLPRIGNLLQVLESARLARSLAILCGSGVALLEALQVATETIG 294

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N+ ++  +    ++V+ G+SL +AL+ ++ FPP++++M+ SGE SG L  ML R AD+Q+
Sbjct: 295 NRRIRLAMEQVRQHVQGGTSLHRALDASQQFPPLLVNMVGSGEASGTLADMLERVADDQE 354

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMN 401
             F   V+ A+ +F P +I +M  +VLFIV+A L+PI+++N
Sbjct: 355 RGFARQVDTAMALFEPLMILVMGAVVLFIVLAVLLPIMQLN 395