Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 396 a.a., Predicted secretion system X protein GspF-like from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  139 bits (349), Expect = 2e-37
 Identities = 100/360 (27%), Positives = 174/360 (48%), Gaps = 13/360 (3%)

Query: 47  VKAARSRSQGFAFKRGISTP-DLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTML 105
           V  +R R       RG S    L L +++L +L+ SG+ + E +  +AE+  +  +R +L
Sbjct: 39  VSVSRERGWTPGAARGASAAFPLLLFSQELLSLLSSGVSIVEAVETLAEKESRAPVRAVL 98

Query: 106 VAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRS 165
             +   + EG T S +L   P  F  L+ + V A E++ +L   L R   YA   + +R 
Sbjct: 99  QQILLSLREGQTFSGALQALPQNFPPLYVATVRASERTSNLGEALGRYIAYATQLETLRG 158

Query: 166 KLQQAMIYPVVLVVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFL-QHW 224
           KL  A IYP +L+  +  ++ FL+  VVP+    +  MG  LP  ++ +L     + QHW
Sbjct: 159 KLVSAAIYPAMLIGVSSLVILFLMGYVVPRFSHIYEDMGDQLPFMSRLMLQWGQAVEQHW 218

Query: 225 ----GISLLVGLLMLIYLVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSI 280
               G+ + +G  ++    RWL  +   +L W      +P +G+  R    AR  RTL +
Sbjct: 219 PVLLGLMVALGAALVSGGGRWLAQRIAGQL-W-----RIPAVGERMRVFQLARLYRTLGM 272

Query: 281 CTSSAIPILDGMRVAVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIA 340
                I I+  + + V  + +  ++ ++LAA   +REG  + +A E   L   + L M+ 
Sbjct: 273 LLRGGIAIVPALEM-VGGLLSPALQPRLLAATGRIREGQPMSQAFEAQGLSTAVSLRMLR 331

Query: 341 SGEQSGELEGMLTRAADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM 400
            GE++G +  M+ RAA   D         A  +  PAL+ +M  ++  IV+   +PI ++
Sbjct: 332 VGERTGNMGEMMERAAAFHDEELARWAEWATRLLGPALMLIMGLVIGAIVVLMYLPIFQL 391