Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 405 a.a., Type IV fimbrial assembly protein PilC from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  186 bits (473), Expect = 8e-52
 Identities = 109/405 (26%), Positives = 208/405 (51%), Gaps = 13/405 (3%)

Query: 2   AAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKR 61
           A FE++  D  G+  +G        QV   L+ Q +VP ++ + ++ + +          
Sbjct: 12  AVFEWEGKDRNGKTVRGETRAVGENQVLAALRRQGIVPGKIKKRRMSSGKR--------- 62

Query: 62  GISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDS 121
            I   D+A+ TRQLAT++++G+PL +    V   +  P +  +L  +R  V  G +LS +
Sbjct: 63  -IKPKDIAIFTRQLATMMKAGVPLLQAFDIVGRGNANPSVTKLLNDIRTDVETGTSLSSA 121

Query: 122 LGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181
              +P  FD L+ ++V AGE +G L+ +L+RLA Y E  + ++SK++ A++YP+ +V+ A
Sbjct: 122 FRKHPLYFDSLYCNLVEAGEAAGILEDLLDRLATYMEKTEALKSKIKSALMYPIAVVIVA 181

Query: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQH--WGISLLVGLLMLIYLV 239
             +V  ++  V+P     F   G  LPA T  ++  S+F     W I  ++G  +  ++ 
Sbjct: 182 FVVVTIIMIFVIPSFKEVFSSFGADLPAPTLAVIAMSEFFTEYWWLIFGVLGGGLYFFMQ 241

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
            W   +  ++   DR ++ LP+ G +      AR+ RTL+   ++ +P+++ +       
Sbjct: 242 AWRRNE-KVQRFMDRLLLKLPIFGVLIEKSVIARWTRTLATMFAAGVPLVEALDSVGGAS 300

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N           + V  G+SL  A+    +FP M+L M A GE+SG ++ ML++AAD  
Sbjct: 301 GNSVYTIATEKIQQEVSTGTSLTTAMTNANVFPSMVLQMCAIGEESGSIDHMLSKAADFY 360

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           ++  +  V     +  P +I ++  ++  IV++  +PI ++  ++
Sbjct: 361 ESEVDDMVAGISSLMEPIIIVVLGTVIGGIVVSMYLPIFKLGQVV 405